HL_6PPF_046

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_046 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.1617

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6PPF|1|A|C|1835
6PPF|1|A|G|1836
6PPF|1|A|U|1837
6PPF|1|A|A|1838
6PPF|1|A|A|1839
6PPF|1|A|G|1840

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2