HL_6PPF_050

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUAUCG

Length

7 nucleotides

Bulged bases

6PPF|1|A|U|2242

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_050 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.2093

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6PPF|1|A|C|2238
6PPF|1|A|U|2239
6PPF|1|A|U|2240
6PPF|1|A|A|2241
6PPF|1|A|U|2242
6PPF|1|A|C|2243
6PPF|1|A|G|2244

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2