HL_6PPF_054

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGUAAAGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_054 not in the Motif Atlas

Geometric match to HL_6VMY_005

Geometric discrepancy: 0.3915

The information below is about HL_6VMY_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14856.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6PPF|1|A|G|2352
6PPF|1|A|U|2353
6PPF|1|A|G|2354
6PPF|1|A|U|2355
6PPF|1|A|A|2356
6PPF|1|A|A|2357
6PPF|1|A|A|2358
6PPF|1|A|G|2359
6PPF|1|A|G|2360
6PPF|1|A|C|2361

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L27