HL_6VMY_005

3D structure

PDB id

6VMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis cobalamin riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UCUGCGAGGA

Length

10 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19727.1

Basepair signature

cWW-F-F

Number of instances in this motif group

3

Unit IDs

6VMY|1|A|U|333
6VMY|1|A|C|334
6VMY|1|A|U|335
6VMY|1|A|G|336
6VMY|1|A|C|337
6VMY|1|A|G|338
6VMY|1|A|A|339
6VMY|1|A|G|340
6VMY|1|A|G|341
6VMY|1|A|A|342

Current chains

Chain A

B. subtilis cobalamin riboswitch

Nearby chains