HL_6PPF_060

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6PPF|1|A|G|2780, 6PPF|1|A|C|2784

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_060 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1972

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6PPF|1|A|C|2774
6PPF|1|A|U|2775
6PPF|1|A|G|2776
6PPF|1|A|A|2777
6PPF|1|A|A|2778
6PPF|1|A|A|2779
6PPF|1|A|G|2780
6PPF|1|A|C|2781
6PPF|1|A|A|2782
6PPF|1|A|U|2783
6PPF|1|A|C|2784
6PPF|1|A|U|2785
6PPF|1|A|A|2786
6PPF|1|A|A|2787
6PPF|1|A|G|2788

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13