HL_6PRV_008

3D structure

PDB id

6PRV (explore in PDB, NAKB, or RNA 3D Hub)

Description

58nt RNA L11-binding domain from E. coli 23S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.71 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PRV_008 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1031

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6PRV|1|D|C|1092
6PRV|1|D|G|1093
6PRV|1|D|U|1094
6PRV|1|D|A|1095
6PRV|1|D|A|1096
6PRV|1|D|U|1097
6PRV|1|D|A|1098
6PRV|1|D|G|1099

Current chains

Chain D

23S rRNA

Nearby chains