HL_6Q8Y_004

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

6Q8Y|1|2|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_004 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.385

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6Q8Y|1|2|C|190
6Q8Y|1|2|C|191
6Q8Y|1|2|U|192
6Q8Y|1|2|U|193
6Q8Y|1|2|U|194
6Q8Y|1|2|G|195

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain V

40S ribosomal protein S8-A