HL_6Q8Y_012

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

6Q8Y|1|2|A|452, 6Q8Y|1|2|U|454, 6Q8Y|1|2|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_012 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.2585

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6Q8Y|1|2|U|450
6Q8Y|1|2|A|451
6Q8Y|1|2|A|452
6Q8Y|1|2|U|453
6Q8Y|1|2|U|454
6Q8Y|1|2|C|455
6Q8Y|1|2|A|456

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain d

40S ribosomal protein S24-A