HL_6Q8Y_036

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAGAGAUCUCAGA

Length

14 nucleotides

Bulged bases

6Q8Y|1|2|U|1708, 6Q8Y|1|2|C|1709

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_036 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.247

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6Q8Y|1|2|U|1687
6Q8Y|1|2|U|1688
6Q8Y|1|2|A|1689
6Q8Y|1|2|G|1690
6Q8Y|1|2|A|1691
6Q8Y|1|2|G|1692
6Q8Y|1|2|A|1693
6Q8Y|1|2|U|1708
6Q8Y|1|2|C|1709
6Q8Y|1|2|U|1710
6Q8Y|1|2|C|1711
6Q8Y|1|2|A|1712
6Q8Y|1|2|G|1713
6Q8Y|1|2|A|1714

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S6-A