HL_6Q8Y_044
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|G|218, 6Q8Y|1|BQ|A|219, 6Q8Y|1|BQ|G|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q8Y_044 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.0911
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
6Q8Y|1|BQ|G|216
6Q8Y|1|BQ|U|217
6Q8Y|1|BQ|G|218
6Q8Y|1|BQ|A|219
6Q8Y|1|BQ|G|220
6Q8Y|1|BQ|A|221
6Q8Y|1|BQ|A|222
6Q8Y|1|BQ|U|223
6Q8Y|1|BQ|C|224
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AK
- 60S ribosomal protein L26-A
- Chain BE
- 60S ribosomal protein L4-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: