HL_6Q8Y_055

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCUUC

Length

6 nucleotides

Bulged bases

6Q8Y|1|BQ|C|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_055 not in the Motif Atlas

Homologous match to HL_8C3A_018

Geometric discrepancy: 0.1804

The information below is about HL_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

6Q8Y|1|BQ|G|763
6Q8Y|1|BQ|U|764
6Q8Y|1|BQ|C|765
6Q8Y|1|BQ|U|766
6Q8Y|1|BQ|U|767
6Q8Y|1|BQ|C|768

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L36-A

Chain AJ

60S ribosomal protein L13-A