HL_6Q8Y_059

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6Q8Y|1|BQ|C|959, 6Q8Y|1|BQ|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_059 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0765

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6Q8Y|1|BQ|C|958
6Q8Y|1|BQ|C|959
6Q8Y|1|BQ|U|960
6Q8Y|1|BQ|C|961
6Q8Y|1|BQ|A|962
6Q8Y|1|BQ|G|963

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AP

60S ribosomal protein L42-A

Chain AR

60S ribosomal protein L28

Chain AV

60S ribosomal protein L29