HL_6Q8Y_061

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6Q8Y|1|BQ|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_061 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.1117

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6Q8Y|1|BQ|C|1076
6Q8Y|1|BQ|U|1077
6Q8Y|1|BQ|U|1078
6Q8Y|1|BQ|A|1079
6Q8Y|1|BQ|A|1080
6Q8Y|1|BQ|U|1081
6Q8Y|1|BQ|U|1082
6Q8Y|1|BQ|G|1083

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AV

60S ribosomal protein L29

Chain BI

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L21-A