HL_6Q8Y_076

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACCUUU

Length

6 nucleotides

Bulged bases

6Q8Y|1|BQ|C|1762, 6Q8Y|1|BQ|U|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_076 not in the Motif Atlas

Homologous match to HL_5TBW_039

Geometric discrepancy: 0.5548

The information below is about HL_5TBW_039

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_61202.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

6Q8Y|1|BQ|A|1760
6Q8Y|1|BQ|C|1761
6Q8Y|1|BQ|C|1762
6Q8Y|1|BQ|U|1763
6Q8Y|1|BQ|U|1764
6Q8Y|1|BQ|U|1765

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BF

60S ribosomal protein L19-A