HL_6Q8Y_080

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6Q8Y|1|BQ|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_080 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.044

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6Q8Y|1|BQ|C|1923
6Q8Y|1|BQ|U|1924
6Q8Y|1|BQ|U|1925
6Q8Y|1|BQ|C|1926
6Q8Y|1|BQ|G|1927
6Q8Y|1|BQ|G|1928

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AS

60S ribosomal protein L41-B

Chain AT

60S ribosomal protein L43-A