HL_6Q8Y_082

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

6Q8Y|1|BQ|G|2111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_082 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.5386

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6Q8Y|1|BQ|G|2110
6Q8Y|1|BQ|G|2111
6Q8Y|1|BQ|U|2112
6Q8Y|1|BQ|A|2113
6Q8Y|1|BQ|C|2114

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AE

60S ribosomal protein L24-A

Chain BF

60S ribosomal protein L19-A