HL_6Q8Y_093

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

6Q8Y|1|BQ|A|2637, 6Q8Y|1|BQ|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_093 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.0798

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6Q8Y|1|BQ|U|2633
6Q8Y|1|BQ|U|2634
6Q8Y|1|BQ|A|2635
6Q8Y|1|BQ|A|2636
6Q8Y|1|BQ|A|2637
6Q8Y|1|BQ|C|2638
6Q8Y|1|BQ|G|2639
6Q8Y|1|BQ|A|2640
6Q8Y|1|BQ|U|2641
6Q8Y|1|BQ|A|2642
6Q8Y|1|BQ|A|2643
6Q8Y|1|BQ|C|2644
6Q8Y|1|BQ|G|2645

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AV

60S ribosomal protein L29

Chain BD

60S ribosomal protein L10

Chain BJ

60S ribosomal protein L21-A