HL_6Q8Y_096

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUCAGUGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_096 not in the Motif Atlas

Homologous match to HL_8C3A_059

Geometric discrepancy: 0.1197

The information below is about HL_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6Q8Y|1|BQ|U|2724
6Q8Y|1|BQ|U|2725
6Q8Y|1|BQ|C|2726
6Q8Y|1|BQ|A|2727
6Q8Y|1|BQ|G|2728
6Q8Y|1|BQ|U|2729
6Q8Y|1|BQ|G|2730
6Q8Y|1|BQ|U|2731
6Q8Y|1|BQ|G|2732

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AP

60S ribosomal protein L42-A

Chain AR

60S ribosomal protein L28

Chain BB

60S ribosomal protein L18-A

Chain BJ

60S ribosomal protein L21-A