HL_6Q8Y_099

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_099 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1163

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6Q8Y|1|BQ|C|2840
6Q8Y|1|BQ|G|2841
6Q8Y|1|BQ|U|2842
6Q8Y|1|BQ|U|2843
6Q8Y|1|BQ|C|2844
6Q8Y|1|BQ|A|2845
6Q8Y|1|BQ|U|2846
6Q8Y|1|BQ|A|2847
6Q8Y|1|BQ|G|2848

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain BD

60S ribosomal protein L10