HL_6Q8Y_107

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

6Q8Y|1|BQ|A|3243, 6Q8Y|1|BQ|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_107 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.2891

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6Q8Y|1|BQ|C|3240
6Q8Y|1|BQ|G|3241
6Q8Y|1|BQ|G|3242
6Q8Y|1|BQ|A|3243
6Q8Y|1|BQ|A|3244
6Q8Y|1|BQ|A|3245
6Q8Y|1|BQ|G|3246
6Q8Y|1|BQ|G|3247

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3