HL_6Q8Y_116
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCUUUCACC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q8Y_116 not in the Motif Atlas
- Homologous match to HL_4V9Q_214
- Geometric discrepancy: 0.372
- The information below is about HL_4V9Q_214
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
6Q8Y|1|m|G|31
6Q8Y|1|m|C|32
6Q8Y|1|m|U|33
6Q8Y|1|m|U|34
6Q8Y|1|m|U|35
6Q8Y|1|m|C|36
6Q8Y|1|m|A|37
6Q8Y|1|m|C|38
6Q8Y|1|m|C|39
Current chains
- Chain m
- E-site tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- Rps5p
- Chain L
- 40S ribosomal protein S28-A
- Chain Z
- 40S ribosomal protein S14-B
- Chain l
- mRNA
- Chain n
- Transfer RNA; tRNA
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