HL_6Q8Y_120
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUCAAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q8Y_120 not in the Motif Atlas
- Homologous match to HL_6PMO_005
- Geometric discrepancy: 0.1373
- The information below is about HL_6PMO_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 143
Unit IDs
6Q8Y|1|n|G|53
6Q8Y|1|n|U|54
6Q8Y|1|n|U|55
6Q8Y|1|n|C|56
6Q8Y|1|n|A|57
6Q8Y|1|n|A|58
6Q8Y|1|n|G|59
6Q8Y|1|n|U|60
6Q8Y|1|n|C|61
Current chains
- Chain n
- P-site tRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L11-B
- Chain AP
- 60S ribosomal protein L42-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: