HL_6Q8Y_121

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUCCCGUCCGAUCA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_121 not in the Motif Atlas

Homologous match to HL_8C3A_228

Geometric discrepancy: 0.0876

The information below is about HL_8C3A_228

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50688.1

Basepair signature

cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F

Number of instances in this motif group

2

Unit IDs

6Q8Y|1|BR|U|32
6Q8Y|1|BR|U|33
6Q8Y|1|BR|C|34
6Q8Y|1|BR|C|35
6Q8Y|1|BR|C|36
6Q8Y|1|BR|G|37
6Q8Y|1|BR|U|38
6Q8Y|1|BR|C|39
6Q8Y|1|BR|C|40
6Q8Y|1|BR|G|41
6Q8Y|1|BR|A|42
6Q8Y|1|BR|U|43
6Q8Y|1|BR|C|44
6Q8Y|1|BR|A|45

Current chains

Chain BR

5S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L11-B

Chain BI

60S ribosomal protein L5

Chain BQ

Large subunit ribosomal RNA; LSU rRNA