HL_6Q95_008

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

6Q95|1|1|U|271|||K, 6Q95|1|1|U|271|||L, 6Q95|1|1|U|271|||N

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_008 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.2762

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6Q95|1|1|G|271|||I
6Q95|1|1|C|271|||J
6Q95|1|1|U|271|||K
6Q95|1|1|U|271|||L
6Q95|1|1|G|271|||M
6Q95|1|1|U|271|||N
6Q95|1|1|C|271|||O

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28