6Q95 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6Q95_124 | 1/1/59:68 | No text annotation | homologous HL_9DFE_001 HL_93438.2 | |
| HL_6Q95_002 | 1/1/87:95 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_6Q95_003 | 1/1/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_6Q95_004 | 1/1/137:143 | No text annotation | ||
| HL_6Q95_005 | 1/1/194:201 | No text annotation | homologous HL_5J7L_139 HL_30068.2 | |
| HL_6Q95_006 | 1/1/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_6Q95_007 | 1/1/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_6Q95_008 | 1/1/271I:271O | No text annotation | geometric HL_2Y8Y_001 HL_81100.2 | |
| HL_6Q95_009 | 1/1/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_6Q95_010 | 1/1/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_6Q95_114 | 1/1/327:335 | No text annotation | homologous HL_9DFE_011 HL_27670.2 | |
| HL_6Q95_012 | 1/1/382:392 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_6Q95_013 | 1/1/410:417 | Pseudoknot geometry | homologous HL_4WF9_014 HL_30680.3 | |
| HL_6Q95_014 | 1/1/462:467 | GNRA | homologous HL_7A0S_015 HL_37824.7 | |
| HL_6Q95_015 | 1/1/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_6Q95_016 | 1/1/543:549 | No text annotation | ||
| HL_6Q95_017 | 1/1/566:575 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_6Q95_018 | 1/1/612:615 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_6Q95_019 | 1/1/629:634 | GNRA | homologous HL_7A0S_020 HL_37824.7 | |
| HL_6Q95_020 | 1/1/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_6Q95_021 | 1/1/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_6Q95_022 | 1/1/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_6Q95_023 | 1/1/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_6Q95_024 | 1/1/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_6Q95_026 | 1/1/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_6Q95_027 | 1/1/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6Q95_028 | 1/1/1064:1074 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6Q95_029 | 1/1/1170:1179 | No text annotation | ||
| HL_6Q95_030 | 1/1/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_6Q95_031 | 1/1/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_6Q95_032 | 1/1/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_57176.2 | |
| HL_6Q95_033 | 1/1/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6Q95_034 | 1/1/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6Q95_035 | 1/1/1451:1461 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_6Q95_036 | 1/1/1492:1498 | No text annotation | ||
| HL_6Q95_037 | 1/1/1532:1537 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_6Q95_038 | 1/1/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_6Q95_039 | 1/1/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6Q95_040 | 1/1/1631:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_6Q95_041 | 1/1/1691:1696 | UNCG | homologous HL_7A0S_042 HL_34617.5 | |
| HL_6Q95_042 | 1/1/1718:1744 | No text annotation | ||
| HL_6Q95_043 | 1/1/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6Q95_044 | 1/1/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_6Q95_045 | 1/1/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6Q95_046 | 1/1/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_6Q95_047 | 1/1/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_6Q95_048 | 1/1/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_6Q95_049 | 1/1/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_6Q95_051 | 1/1/2205:2219 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
| HL_6Q95_052 | 1/1/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_6Q95_053 | 1/1/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_6Q95_054 | 1/1/2303:2313 | No text annotation | homologous HL_4WF9_051 NA | |
| HL_6Q95_055 | 1/1/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_6Q95_056 | 1/1/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_6Q95_057 | 1/1/2374:2379 | GNRA | homologous HL_4WF9_054 HL_37824.7 | |
| HL_6Q95_058 | 1/1/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_6Q95_059 | 1/1/2471:2479 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_6Q95_060 | 1/1/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_6Q95_061 | 1/1/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_6Q95_062 | 1/1/2594:2599 | GNRA | homologous HL_7A0S_062 HL_37824.7 | |
| HL_6Q95_063 | 1/1/2658:2663 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_6Q95_064 | 1/1/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_6Q95_065 | 1/1/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_6Q95_066 | 1/1/2793:2804 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_6Q95_067 | 1/1/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_6Q95_068 | 1/1/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 | |
| HL_6Q95_069 | 1/2/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_6Q95_070 | 1/2/77:92 | No text annotation | ||
| HL_6Q95_071 | 1/2/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_6Q95_072 | 1/2/188:189L | No text annotation | ||
| HL_6Q95_118 | 1/2/201:216 | No text annotation | ||
| HL_6Q95_074 | 1/2/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_6Q95_075 | 1/2/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_6Q95_076 | 1/2/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_6Q95_077 | 1/2/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_6Q95_078 | 1/2/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_6Q95_079 | 1/2/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_6Q95_080 | 1/2/458:473 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_6Q95_081 | 1/2/522:527 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_6Q95_082 | 1/2/617:623 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_6Q95_083 | 1/2/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_6Q95_084 | 1/2/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_6Q95_085 | 1/2/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_6Q95_119 | 1/2/835:851 | No text annotation | ||
| HL_6Q95_086 | 1/2/838:848 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_6Q95_087 | 1/2/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_6Q95_088 | 1/2/897:902 | GNRA | homologous HL_6CZR_091 NA | |
| HL_6Q95_089 | 1/2/962:973 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6Q95_090 | 1/2/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_6Q95_091 | 1/2/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_6Q95_120 | 1/2/1087:1098 | No text annotation | ||
| HL_6Q95_092 | 1/2/1089:1097 | No text annotation | ||
| HL_6Q95_121 | 1/2/1124:1149 | No text annotation | ||
| HL_6Q95_093 | 1/2/1134:1140 | No text annotation | ||
| HL_6Q95_094 | 1/2/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_6Q95_095 | 1/2/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_6Q95_096 | 1/2/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_6Q95_097 | 1/2/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_6Q95_098 | 1/2/1445:1457 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_6Q95_099 | 1/2/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_6Q95_122 | 1/3/33:49 | No text annotation | ||
| HL_6Q95_100 | 1/3/38:44 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_6Q95_101 | 1/3/86:91 | GNRA | homologous HL_7RQB_071 NA | |
| HL_6Q95_102 | 1/4/52:64 | No text annotation | ||
| HL_6Q95_103 | 1/4/115:124 | tRNA D-loop | geometric HL_7UQ6_001 HL_20811.4 | |
| HL_6Q95_104 | 1/4/143:154 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_6Q95_125 | 1/4/193:207 | No text annotation | ||
| HL_6Q95_106 | 1/4/252:280 | No text annotation | ||
| HL_6Q95_107 | 1/4/326:334 | No text annotation | ||
| HL_6Q95_108 | 1/7/13:22 | tRNA D-loop | homologous HL_4V90_032 HL_20811.4 | |
| HL_6Q95_109 | 1/7/31:39 | tRNA anticodon loop | homologous HL_6UFG_007 HL_06059.6 | |
| HL_6Q95_110 | 1/7/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3TUP_003 HL_28252.8 | |
| HL_6Q95_111 | 1/8/13:22 | No text annotation | homologous HL_3WFS_001 NA | |
| HL_6Q95_112 | 1/8/30:40 | No text annotation | homologous HL_4V7M_039 HL_36684.4 | |
| HL_6Q95_113 | 1/8/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4WT8_217 HL_28252.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6Q95_001 | No text annotation | ||
| HL_6Q95_011 | No text annotation | ||
| HL_6Q95_115 | No text annotation | ||
| HL_6Q95_116 | No text annotation | ||
| HL_6Q95_025 | No text annotation | ||
| HL_6Q95_050 | No text annotation | ||
| HL_6Q95_117 | No text annotation | ||
| HL_6Q95_073 | No text annotation | ||
| HL_6Q95_105 | No text annotation | ||
| HL_6Q95_123 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6Q95_001 | 1/1/24:30, 1/1/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_6Q95_002 | 1/1/36:37, 1/1/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.6 | |
| IL_6Q95_003 | 1/1/42:43, 1/1/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_6Q95_004 | 1/1/81:85, 1/1/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_6Q95_005 | 1/1/183:184, 1/1/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
| IL_6Q95_006 | 1/1/188:194, 1/1/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_6Q95_007 | 1/1/239:245, 1/1/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_6Q95_008 | 1/1/271E:271I, 1/1/271O:271S | No text annotation | ||
| IL_6Q95_009 | 1/1/272D:272F, 1/1/363D:364 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_6Q95_185 | 1/1/272:272, 1/1/363:364 | No text annotation | geometric IL_2OE8_002 IL_51479.1 | |
| IL_6Q95_011 | 1/1/280:287, 1/1/354:360 | No text annotation | ||
| IL_6Q95_012 | 1/1/288:290, 1/1/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_6Q95_013 | 1/1/293:295, 1/1/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6Q95_014 | 1/1/481:484, 1/1/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_6Q95_015 | 1/1/564:566, 1/1/575:577 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
| IL_6Q95_016 | 1/1/606:610, 1/1/618:622 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_6Q95_017 | 1/1/672:674, 1/1/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_87907.2 | |
| IL_6Q95_018 | 1/1/674:678, 1/1/799:806 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_54041.2 | |
| IL_6Q95_019 | 1/1/697:698, 1/1/763:765 | Single bulged A | geometric IL_4V9F_025 IL_31462.6 | |
| IL_6Q95_020 | 1/1/702:703, 1/1/728:730 | Single bulged G | homologous IL_4WF9_023 IL_00225.13 | |
| IL_6Q95_186 | 1/1/702:707, 1/1/724:730 | No text annotation | geometric IL_4V88_462 NA | |
| IL_6Q95_021 | 1/1/703:708, 1/1/723:728 | Triple sheared with non-canonical cWW | geometric IL_7A0S_018 IL_06136.2 | |
| IL_6Q95_022 | 1/1/738:741, 1/1/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_6Q95_023 | 1/1/775:777, 1/1/787:791 | Multiple bulged bases | homologous IL_5J7L_265 IL_06549.2 | |
| IL_6Q95_024 | 1/1/837:838, 1/1/940:942 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_6Q95_025 | 1/1/844:846, 1/1/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_6Q95_026 | 1/1/846:850, 1/1/927:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_6Q95_208 | 1/1/858:862, 1/1/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7A0S_111 IL_38862.4 | |
| IL_6Q95_209 | 1/1/862:863, 1/1/913:915 | Minor groove platform | homologous IL_7A0S_028 IL_51454.3 | |
| IL_6Q95_029 | 1/1/864:868, 1/1/909:912 | C-loop with bulged stacked A's | geometric IL_7RQB_029 NA | |
| IL_6Q95_030 | 1/1/875:880, 1/1/898:902 | No text annotation | ||
| IL_6Q95_188 | 1/1/875:882, 1/1/894:902 | No text annotation | ||
| IL_6Q95_031 | 1/1/880:882, 1/1/894:898 | No text annotation | ||
| IL_6Q95_032 | 1/1/952:954, 1/1/963:965 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_87907.2 | |
| IL_6Q95_033 | 1/1/994:996, 1/1/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6Q95_034 | 1/1/998:1002, 1/1/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_38507.2 | |
| IL_6Q95_035 | 1/1/1004:1011, 1/1/1150:1151 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
| IL_6Q95_036 | 1/1/1011:1013, 1/1/1149:1150 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_6Q95_037 | 1/1/1018:1024, 1/1/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_6Q95_038 | 1/1/1024:1030, 1/1/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_6Q95_039 | 1/1/1031:1034, 1/1/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6Q95_189 | 1/1/1040:1054, 1/1/1105:1115 | No text annotation | ||
| IL_6Q95_040 | 1/1/1055:1058, 1/1/1080:1104 | No text annotation | ||
| IL_6Q95_041 | 1/1/1058:1062, 1/1/1076:1080 | No text annotation | ||
| IL_6Q95_042 | 1/1/1196:1198, 1/1/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_6Q95_043 | 1/1/1202:1206, 1/1/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_6Q95_044 | 1/1/1208:1215, 1/1/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6Q95_045 | 1/1/1219:1221, 1/1/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_6Q95_046 | 1/1/1262:1269, 1/1/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_6Q95_047 | 1/1/1310:1313, 1/1/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6Q95_048 | 1/1/1319:1323, 1/1/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_6Q95_049 | 1/1/1351:1355, 1/1/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_6Q95_050 | 1/1/1357:1361, 1/1/1370:1374 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_17136.7 | |
| IL_6Q95_051 | 1/1/1415:1416, 1/1/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_6Q95_052 | 1/1/1417:1421, 1/1/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_6Q95_053 | 1/1/1433:1435, 1/1/1557:1560 | No text annotation | homologous IL_7A0S_052 IL_14688.1 | |
| IL_6Q95_054 | 1/1/1437:1440, 1/1/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_6Q95_055 | 1/1/1448:1451, 1/1/1461:1463 | No text annotation | ||
| IL_6Q95_056 | 1/1/1469:1473, 1/1/1518:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_6Q95_210 | 1/1/1481:1485, 1/1/1504:1510 | No text annotation | ||
| IL_6Q95_058 | 1/1/1486:1488, 1/1/1502:1503 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6Q95_191 | 1/1/1487:1491, 1/1/1499:1502 | No text annotation | geometric IL_6XJQ_002 IL_48444.6 | |
| IL_6Q95_059 | 1/1/1488:1489, 1/1/1500:1502 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6Q95_060 | 1/1/1489:1491, 1/1/1499:1500 | Single bulged A | geometric IL_5J7L_302 IL_31462.6 | |
| IL_6Q95_192 | 1/1/1526:1529, 1/1/1540:1546 | No text annotation | homologous IL_9DFE_062 IL_09044.1 | |
| IL_6Q95_062 | 1/1/1651:1656, 1/1/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_6Q95_063 | 1/1/1663:1665, 1/1/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_6Q95_064 | 1/1/1666:1669, 1/1/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_6Q95_193 | 1/1/1666:1674, 1/1/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_6Q95_065 | 1/1/1669:1674, 1/1/1990:1993 | Intercalated tWH | geometric IL_7A0S_062 IL_76758.2 | |
| IL_6Q95_066 | 1/1/1686:1691, 1/1/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6Q95_067 | 1/1/1770:1771, 1/1/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_6Q95_068 | 1/1/1798:1804, 1/1/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6Q95_069 | 1/1/1837:1840, 1/1/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_6Q95_070 | 1/1/1841:1842, 1/1/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_6Q95_071 | 1/1/1846:1849, 1/1/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_6Q95_072 | 1/1/1851:1855, 1/1/1887:1891 | UAA/GAN with extra pair | homologous IL_4WF9_073 IL_89021.2 | |
| IL_6Q95_073 | 1/1/1856:1860, 1/1/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_6Q95_074 | 1/1/1933:1934, 1/1/1964:1967 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_6Q95_075 | 1/1/1934:1945, 1/1/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_6Q95_076 | 1/1/2050:2052, 1/1/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6Q95_077 | 1/1/2054:2057, 1/1/2611:2615 | No text annotation | homologous IL_7RQB_079 NA | |
| IL_6Q95_078 | 1/1/2067:2069, 1/1/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6Q95_079 | 1/1/2070:2071, 1/1/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6Q95_080 | 1/1/2081:2083, 1/1/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6Q95_081 | 1/1/2085:2087, 1/1/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_28037.2 | |
| IL_6Q95_082 | 1/1/2106:2108, 1/1/2182:2183 | Minor groove platform | geometric IL_1U6B_007 IL_51454.3 | |
| IL_6Q95_194 | 1/1/2106:2110, 1/1/2179:2183 | No text annotation | ||
| IL_6Q95_083 | 1/1/2108:2110, 1/1/2179:2182 | No text annotation | ||
| IL_6Q95_084 | 1/1/2110:2121, 1/1/2177:2179 | Isolated near basepair | geometric IL_4V88_406 NA | |
| IL_6Q95_085 | 1/1/2297:2299, 1/1/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_6Q95_086 | 1/1/2350:2353, 1/1/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_6Q95_087 | 1/1/2401:2403, 1/1/2414:2415 | Single bulged U | homologous IL_4WF9_088 IL_89505.4 | |
| IL_6Q95_088 | 1/1/2453:2454, 1/1/2498:2500 | Single stack bend | homologous IL_7RQB_091 NA | |
| IL_6Q95_089 | 1/1/2454:2455, 1/1/2496:2498 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_6Q95_090 | 1/1/2457:2459, 1/1/2493:2494 | Major groove platform | geometric IL_4WF9_091 IL_48076.6 | |
| IL_6Q95_091 | 1/1/2459:2461, 1/1/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_6Q95_092 | 1/1/2466:2470, 1/1/2480:2484 | Triple sheared | homologous IL_4WF9_093 IL_17948.2 | |
| IL_6Q95_093 | 1/1/2507:2508, 1/1/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_6Q95_094 | 1/1/2510:2512, 1/1/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7A0S_089 IL_07785.1 | |
| IL_6Q95_095 | 1/1/2512:2513, 1/1/2571:2574 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_6Q95_096 | 1/1/2522:2523, 1/1/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_6Q95_097 | 1/1/2591:2592, 1/1/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6Q95_098 | 1/1/2636:2640, 1/1/2774:2782 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.3 | |
| IL_6Q95_099 | 1/1/2652:2658, 1/1/2663:2668 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_106 IL_26307.2 | |
| IL_6Q95_100 | 1/1/2680:2684, 1/1/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_6Q95_101 | 1/1/2687:2691, 1/1/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_6Q95_102 | 1/1/2695:2696, 1/1/2711:2714 | Multiple bulged bases | homologous IL_7A0S_097 IL_42626.2 | |
| IL_6Q95_103 | 1/1/2737:2742, 1/1/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_6Q95_104 | 1/1/2838:2839, 1/1/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_6Q95_211 | 1/1/2843:2845, 1/1/2871:2874 | No text annotation | homologous IL_4WF9_107 IL_31531.3 | |
| IL_6Q95_106 | 1/1/2847:2852, 1/1/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_6Q95_107 | 1/2/30:32, 1/2/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_6Q95_108 | 1/2/44:45, 1/2/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
| IL_6Q95_109 | 1/2/47:52, 1/2/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_6Q95_110 | 1/2/54:56, 1/2/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_6Q95_111 | 1/2/63:66, 1/2/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_6Q95_112 | 1/2/67:69, 1/2/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_6Q95_113 | 1/2/129:131, 1/2/231:232 | Minor groove platform | homologous IL_6CZR_119 NA | |
| IL_6Q95_114 | 1/2/132:136, 1/2/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_6Q95_115 | 1/2/148:153, 1/2/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_6Q95_116 | 1/2/186:188, 1/2/189L:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_6Q95_117 | 1/2/242:247, 1/2/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_6Q95_118 | 1/2/249:252, 1/2/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_6Q95_195 | 1/2/249:253, 1/2/273:275 | No text annotation | homologous IL_6CZR_124 NA | |
| IL_6Q95_119 | 1/2/292:293, 1/2/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_6Q95_120 | 1/2/367:369, 1/2/392:393 | Single bulged U | geometric IL_5TBW_093 NA | |
| IL_6Q95_121 | 1/2/371:375, 1/2/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_6Q95_122 | 1/2/375:376, 1/2/387:389 | Single bulged G | geometric IL_4LFB_016 IL_00225.13 | |
| IL_6Q95_123 | 1/2/409:416, 1/2/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_6Q95_124 | 1/2/446:450, 1/2/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_6CZR_130 NA | |
| IL_6Q95_125 | 1/2/450:455, 1/2/476:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_6Q95_126 | 1/2/504:511, 1/2/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_6Q95_127 | 1/2/515:521, 1/2/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6Q95_128 | 1/2/569:575, 1/2/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_6Q95_129 | 1/2/580:584, 1/2/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_6Q95_130 | 1/2/591:593, 1/2/647:648 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_6Q95_131 | 1/2/593:594, 1/2/645:647 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_6Q95_132 | 1/2/594:596, 1/2/644:645 | Major groove platform | geometric IL_4LFB_024 IL_48076.6 | |
| IL_6Q95_133 | 1/2/597:598, 1/2/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_6Q95_134 | 1/2/605:612, 1/2/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_6Q95_135 | 1/2/654:655, 1/2/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_6Q95_136 | 1/2/657:658, 1/2/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_6Q95_137 | 1/2/662:666, 1/2/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_6Q95_196 | 1/2/673:677, 1/2/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_6Q95_197 | 1/2/683:688, 1/2/699:707 | No text annotation | homologous IL_6CZR_143 NA | |
| IL_6Q95_140 | 1/2/774:778, 1/2/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_6Q95_141 | 1/2/779:783, 1/2/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_6Q95_142 | 1/2/887:894, 1/2/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_6Q95_143 | 1/2/922:923, 1/2/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.6 | |
| IL_6Q95_144 | 1/2/925:927, 1/2/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_6Q95_198 | 1/2/933:935, 1/2/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_6Q95_146 | 1/2/953:954, 1/2/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_6Q95_147 | 1/2/993:997, 1/2/1044:1045 | Minor groove platform | homologous IL_6CZR_151 NA | |
| IL_6Q95_212 | 1/2/1000:1006, 1/2/1023:1041 | No text annotation | ||
| IL_6Q95_149 | 1/2/1048:1050, 1/2/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_6Q95_150 | 1/2/1052:1056, 1/2/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_6Q95_151 | 1/2/1057:1058, 1/2/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_6Q95_152 | 1/2/1060:1061, 1/2/1195:1197 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_6Q95_200 | 1/2/1060:1063, 1/2/1193:1197 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_6Q95_153 | 1/2/1061:1063, 1/2/1193:1195 | Isolated non-canonical cWW pair | geometric IL_6E7L_001 IL_28037.2 | |
| IL_6Q95_154 | 1/2/1087:1089, 1/2/1097:1098 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6Q95_155 | 1/2/1124:1134, 1/2/1140:1149 | No text annotation | ||
| IL_6Q95_201 | 1/2/1247:1253, 1/2/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_6Q95_157 | 1/2/1255:1258, 1/2/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_6Q95_158 | 1/2/1259:1262, 1/2/1273:1276 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_6Q95_159 | 1/2/1303:1308, 1/2/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_85536.2 | |
| IL_6Q95_160 | 1/2/1399:1401, 1/2/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6Q95_161 | 1/2/1401:1404, 1/2/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6Q95_162 | 1/2/1405:1407, 1/2/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4V9F_017 IL_87907.2 | |
| IL_6Q95_163 | 1/2/1407:1409, 1/2/1491:1494 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 IL_57744.1 | |
| IL_6Q95_164 | 1/2/1412:1414, 1/2/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_6Q95_165 | 1/2/1416:1419, 1/2/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_6Q95_166 | 1/2/1431:1435, 1/2/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_6Q95_167 | 1/2/1435:1437, 1/2/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_6Q95_168 | 1/2/1439:1443, 1/2/1459:1462 | No text annotation | ||
| IL_6Q95_169 | 1/3/3:4, 1/3/117:119 | Single stack bend | geometric IL_5J7L_249 IL_90729.1 | |
| IL_6Q95_170 | 1/3/17:18, 1/3/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.6 | |
| IL_6Q95_171 | 1/3/23:28, 1/3/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_6Q95_172 | 1/3/30:31, 1/3/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_6Q95_173 | 1/3/33:38, 1/3/44:49 | No text annotation | homologous IL_7A0S_105 NA | |
| IL_6Q95_174 | 1/3/71:79, 1/3/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_6Q95_176 | 1/4/27:29, 1/4/310:311 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_6Q95_205 | 1/4/27:34, 1/4/305:311 | No text annotation | ||
| IL_6Q95_177 | 1/4/29:34, 1/4/305:310 | No text annotation | ||
| IL_6Q95_178 | 1/4/35:41, 1/4/299:304 | No text annotation | ||
| IL_6Q95_206 | 1/4/35:45, 1/4/292:304 | No text annotation | ||
| IL_6Q95_179 | 1/4/41:45, 1/4/292:299 | No text annotation | ||
| IL_6Q95_180 | 1/4/45:49, 1/4/289:292 | No text annotation | ||
| IL_6Q95_207 | 1/4/133:136, 1/4/162:167 | No text annotation | ||
| IL_6Q95_181 | 1/4/135:136, 1/4/162:165 | No text annotation | ||
| IL_6Q95_182 | 1/4/139:143, 1/4/154:159 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6Q95_184 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_6Q95_010 | No text annotation | ||
| IL_6Q95_027 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6Q95_028 | Major groove platform with extra cWW | ||
| IL_6Q95_187 | Isolated near basepair | ||
| IL_6Q95_057 | No text annotation | ||
| IL_6Q95_190 | No text annotation | ||
| IL_6Q95_061 | No text annotation | ||
| IL_6Q95_105 | No text annotation | ||
| IL_6Q95_138 | No text annotation | ||
| IL_6Q95_139 | No text annotation | ||
| IL_6Q95_145 | No text annotation | ||
| IL_6Q95_199 | No text annotation | ||
| IL_6Q95_148 | No text annotation | ||
| IL_6Q95_156 | No text annotation | ||
| IL_6Q95_202 | Tandem non-canonical cWW pairs | ||
| IL_6Q95_203 | No text annotation | ||
| IL_6Q95_204 | Isolated cWH basepair | ||
| IL_6Q95_175 | Isolated non-canonical cWW pair | ||
| IL_6Q95_183 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6Q95_001 | 1/1/30:31, 1/1/474:481, 1/1/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6Q95_026 | 1/1/30:31, 1/1/474:484, 1/1/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_6Q95_027 | 1/1/32:35, 1/1/445:461, 1/1/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_6Q95_002 | 1/1/56:57, 1/1/70:76, 1/1/110:114 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_6Q95_003 | 1/1/683:689, 1/1/773:775, 1/1/791:794 | No text annotation | homologous J3_7A0S_004 J3_64189.2 | |
| J3_6Q95_004 | 1/1/698:700, 1/1/732:736, 1/1/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6Q95_005 | 1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6Q95_006 | 1/1/1306:1309, 1/1/1605:1611, 1/1/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_6Q95_007 | 1/1/1344:1350, 1/1/1381:1385, 1/1/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_6Q95_028 | 1/1/1424:1429, 1/1/1564:1565, 1/1/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_6Q95_008 | 1/1/2091:2093, 1/1/2196:2200, 1/1/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_6Q95_009 | 1/1/2282:2284, 1/1/2384:2395, 1/1/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_6Q95_010 | 1/1/2295:2297, 1/1/2321:2323, 1/1/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_6Q95_011 | 1/1/2517:2520, 1/1/2545:2547, 1/1/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_6Q95_012 | 1/1/2814:2815, 1/1/2831:2836, 1/1/2882:2886 | No text annotation | homologous J3_7RQB_014 NA | |
| J3_6Q95_013 | 1/2/46:47, 1/2/361:367, 1/2/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_6Q95_029 | 1/2/46:52, 1/2/359:367, 1/2/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_6Q95_014 | 1/2/586:588, 1/2/651:654, 1/2/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_6Q95_030 | 1/2/586:588, 1/2/651:655, 1/2/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_6Q95_015 | 1/2/672:673, 1/2/717:725, 1/2/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_6Q95_016 | 1/2/826:829, 1/2/857:861, 1/2/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_6Q95_017 | 1/2/936:939, 1/2/1344:1350, 1/2/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_6Q95_018 | 1/2/943:946, 1/2/1235:1237, 1/2/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_6Q95_019 | 1/2/955:962, 1/2/973:984, 1/2/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_6Q95_020 | 1/2/990:993, 1/2/1045:1047, 1/2/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_6Q95_031 | 1/2/990:997, 1/2/1044:1047, 1/2/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_6Q95_021 | 1/2/1063:1068, 1/2/1107:1113, 1/2/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_6Q95_035 | 1/2/1073:1074, 1/2/1083:1086, 1/2/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_6Q95_023 | 1/2/1116:1118, 1/2/1155:1161, 1/2/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_6Q95_024 | 1/2/1237:1241, 1/2/1296:1303, 1/2/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_6Q95_033 | 1/3/10:16, 1/3/68:69, 1/3/108:111 | No text annotation | homologous J3_7A0S_021 J3_47324.1 | |
| J3_6Q95_025 | 1/3/11:16, 1/3/68:69, 1/3/108:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_6Q95_036 | 1/4/7:20, 1/4/318:322, 1/4/338:339 | No text annotation | ||
| J4_6Q95_001 | 1/1/297:301, 1/1/316:319, 1/1/323:325, 1/1/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_6Q95_002 | 1/1/1270:1276, 1/1/1294:1295, 1/1/1645:1648, 1/1/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_6Q95_003 | 1/1/1310:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_6Q95_004 | 1/1/1313:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_6Q95_005 | 1/1/1444:1445, 1/1/1466:1467, 1/1/1525:1526, 1/1/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_6Q95_006 | 1/1/1772:1776, 1/1/1788:1792, 1/1/1827:1830, 1/1/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_6Q95_007 | 1/1/1833:1835, 1/1/1905:1906, 1/1/1924:1933, 1/1/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_6Q95_008 | 1/1/2285:2289, 1/1/2343:2347, 1/1/2370:2372, 1/1/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_6Q95_009 | 1/1/2643:2646, 1/1/2674:2676, 1/1/2731:2735, 1/1/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_6Q95_010 | 1/2/115:122, 1/2/239:240, 1/2/286:289, 1/2/311:312 | No text annotation | homologous J4_6CZR_027 NA | |
| J4_6Q95_011 | 1/2/142:144, 1/2/178:183, 1/2/194:198, 1/2/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_6Q95_012 | 1/2/575:577, 1/2/764:769, 1/2/810:821, 1/2/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_6Q95_013 | 1/7/7:10, 1/7/25:27, 1/7/43:49, 1/7/65:66 | No text annotation | homologous J4_7EQJ_002 J4_70449.28 | |
| J4_6Q95_014 | 1/8/7:10, 1/8/25:27, 1/8/43:49, 1/8/65:66 | No text annotation | homologous J4_6UGG_002 J4_70449.28 | |
| J5_6Q95_001 | 1/1/47:54, 1/1/116:121, 1/1/130:131, 1/1/148:150, 1/1/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_6Q95_002 | 1/1/531:533, 1/1/560:564, 1/1/577:579, 1/1/1261:1262, 1/1/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_6Q95_003 | 1/1/584:589, 1/1/668:671, 1/1/809:812, 1/1/1195:1196, 1/1/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_6Q95_004 | 1/1/1674:1682, 1/1/1706:1707, 1/1/1751:1752, 1/1/1756:1764, 1/1/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_6Q95_005 | 1/1/2057:2064, 1/1/2446:2453, 1/1/2500:2507, 1/1/2582:2588, 1/1/2606:2611 | No text annotation | ||
| J5_6Q95_006 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2282, 1/1/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J5_6Q95_007 | 1/2/36:39, 1/2/403:406, 1/2/436:442, 1/2/492:500, 1/2/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_6Q95_008 | 1/2/58:61, 1/2/106:113, 1/2/314:316, 1/2/337:339, 1/2/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J6_6Q95_001 | 1/1/44:45, 1/1/179:183, 1/1/214:224, 1/1/231:235, 1/1/262:266, 1/1/426:433 | No text annotation | ||
| J6_6Q95_002 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2284, 1/1/2384:2395, 1/1/2421:2435 | No text annotation | ||
| J7_6Q95_001 | 1/1/817:822, 1/1/835:836, 1/1/943:946, 1/1/971:976, 1/1/987:991, 1/1/1163:1164, 1/1/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6Q95_022 | No text annotation | ||
| J3_6Q95_032 | No text annotation | ||
| J3_6Q95_034 | No text annotation |
Coloring options: