HL_6Q95_010

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGAG

Length

5 nucleotides

Bulged bases

6Q95|1|1|G|321, 6Q95|1|1|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_010 not in the Motif Atlas

Homologous match to HL_7RQB_011

Geometric discrepancy: 0.0534

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6Q95|1|1|C|319
6Q95|1|1|A|320
6Q95|1|1|G|321
6Q95|1|1|A|322
6Q95|1|1|G|323

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain D

50S ribosomal protein L4