HL_6Q95_014

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_014 not in the Motif Atlas

Homologous match to HL_7A0S_015

Geometric discrepancy: 0.0776

The information below is about HL_7A0S_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6Q95|1|1|C|462
6Q95|1|1|G|463
6Q95|1|1|U|464
6Q95|1|1|G|465
6Q95|1|1|A|466
6Q95|1|1|G|467

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain d

50S ribosomal protein L34