HL_6Q95_023

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

6Q95|1|1|A|781, 6Q95|1|1|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_023 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1306

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6Q95|1|1|U|779
6Q95|1|1|G|780
6Q95|1|1|A|781
6Q95|1|1|A|782
6Q95|1|1|A|783
6Q95|1|1|A|784
6Q95|1|1|G|785

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2