HL_6Q95_025

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGCGCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_025 not in the Motif Atlas

Homologous match to HL_5J7L_158

Geometric discrepancy: 0.5611

The information below is about HL_5J7L_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q95|1|1|G|882
6Q95|1|1|G|883
6Q95|1|1|C|884
6Q95|1|1|G|892
6Q95|1|1|C|893
6Q95|1|1|C|894

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain 4

Transfer-messenger RNA; tmRNA

Chain r

30S ribosomal protein S13

Chain x

30S ribosomal protein S19