HL_6Q95_034

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6Q95|1|1|U|1396, 6Q95|1|1|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_034 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.2651

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6Q95|1|1|G|1389
6Q95|1|1|U|1390
6Q95|1|1|U|1391
6Q95|1|1|A|1392
6Q95|1|1|A|1393
6Q95|1|1|U|1394
6Q95|1|1|A|1395
6Q95|1|1|U|1396
6Q95|1|1|U|1397
6Q95|1|1|C|1398

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain T

50S ribosomal protein L23