HL_6Q95_037

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_037 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.211

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6Q95|1|1|C|1532
6Q95|1|1|G|1533
6Q95|1|1|U|1534
6Q95|1|1|A|1535
6Q95|1|1|C|1536
6Q95|1|1|G|1537

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains