HL_6Q95_071

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_071 not in the Motif Atlas

Homologous match to HL_4LFB_003

Geometric discrepancy: 0.1574

The information below is about HL_4LFB_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6Q95|1|2|G|158
6Q95|1|2|G|159
6Q95|1|2|A|160
6Q95|1|2|A|161
6Q95|1|2|A|162
6Q95|1|2|C|163

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19

Chain y

30S ribosomal protein S20