HL_6Q95_079

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_079 not in the Motif Atlas

Homologous match to HL_5J7L_011

Geometric discrepancy: 0.1406

The information below is about HL_5J7L_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6Q95|1|2|C|419
6Q95|1|2|U|420
6Q95|1|2|U|421
6Q95|1|2|C|422
6Q95|1|2|G|423
6Q95|1|2|G|424

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain i

30S ribosomal protein S4