HL_6Q95_081

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_081 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.2991

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6Q95|1|2|C|522
6Q95|1|2|A|523
6Q95|1|2|G|524
6Q95|1|2|C|525
6Q95|1|2|C|526
6Q95|1|2|G|527

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain 5

SsrA-binding protein

Chain q

30S ribosomal protein S12