HL_6Q95_096
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUGCAACCCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q95_096 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.1264
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6Q95|1|2|C|1314
6Q95|1|2|U|1315
6Q95|1|2|G|1316
6Q95|1|2|C|1317
6Q95|1|2|A|1318
6Q95|1|2|A|1319
6Q95|1|2|C|1320
6Q95|1|2|C|1321
6Q95|1|2|C|1322
6Q95|1|2|G|1323
Current chains
- Chain 2
- 16S RIBOSOMAL RNA
Nearby chains
- Chain a
- 50S ribosomal protein L31
- Chain r
- 30S ribosomal protein S13
- Chain s
- 30S ribosomal protein S14 type Z
- Chain x
- 30S ribosomal protein S19
Coloring options: