HL_6Q95_103
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCUUAAUGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q95_103 not in the Motif Atlas
- Geometric match to HL_7UQ6_001
- Geometric discrepancy: 0.3133
- The information below is about HL_7UQ6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
6Q95|1|4|G|115
6Q95|1|4|C|116
6Q95|1|4|U|117
6Q95|1|4|U|118
6Q95|1|4|A|119
6Q95|1|4|A|120
6Q95|1|4|U|121
6Q95|1|4|G|122
6Q95|1|4|A|123
6Q95|1|4|C|124
Current chains
- Chain 4
- transfer-messenger RNA (tmRNA)
Nearby chains
- Chain h
- 30S ribosomal protein S3
- Chain i
- 30S ribosomal protein S4
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