HL_6Q95_107

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUCGACUC

Length

9 nucleotides

Bulged bases

6Q95|1|4|C|329, 6Q95|1|4|G|330

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q95|1|4|G|326
6Q95|1|4|U|327
6Q95|1|4|U|328
6Q95|1|4|C|329
6Q95|1|4|G|330
6Q95|1|4|A|331
6Q95|1|4|C|332
6Q95|1|4|U|333
6Q95|1|4|C|334

Current chains

Chain 4

transfer-messenger RNA (tmRNA)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 5

SsrA-binding protein

Chain M

50S ribosomal protein L16

Chain V

50S ribosomal protein L25