HL_6Q95_109
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q95_109 not in the Motif Atlas
- Homologous match to HL_6UFG_007
- Geometric discrepancy: 0.1266
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6Q95|1|7|G|31
6Q95|1|7|C|32
6Q95|1|7|U|33
6Q95|1|7|C|34
6Q95|1|7|A|35
6Q95|1|7|U|36
6Q95|1|7|A|37
6Q95|1|7|A|38
6Q95|1|7|C|39
Current chains
- Chain 7
- tRNA-fMet
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 8
- Transfer RNA; tRNA
- Chain 9
- mRNA
- Chain n
- 30S ribosomal protein S9
- Chain r
- 30S ribosomal protein S13
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