3D structure

PDB id
6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
G(5MU)UCAAAUC
Length
9 nucleotides
Bulged bases
6Q95|1|7|U|55
QA status
Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6Q95_110 not in the Motif Atlas
Homologous match to HL_3TUP_003
Geometric discrepancy: 0.2096
The information below is about HL_3TUP_003
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

6Q95|1|7|G|53
6Q95|1|7|5MU|54
6Q95|1|7|U|55
6Q95|1|7|C|56
6Q95|1|7|A|57
6Q95|1|7|A|58
6Q95|1|7|A|59
6Q95|1|7|U|60
6Q95|1|7|C|61

Current chains

Chain 7
tRNA-fMet

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain E
50S ribosomal protein L5
Chain M
50S ribosomal protein L16

Coloring options:


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