HL_6Q95_110
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- G(5MU)UCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- 6Q95|1|7|U|55
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q95_110 not in the Motif Atlas
- Homologous match to HL_3TUP_003
- Geometric discrepancy: 0.2096
- The information below is about HL_3TUP_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6Q95|1|7|G|53
6Q95|1|7|5MU|54
6Q95|1|7|U|55
6Q95|1|7|C|56
6Q95|1|7|A|57
6Q95|1|7|A|58
6Q95|1|7|A|59
6Q95|1|7|U|60
6Q95|1|7|C|61
Current chains
- Chain 7
- tRNA-fMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L5
- Chain M
- 50S ribosomal protein L16
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