HL_6Q95_119

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGGGUCUCCUG

Length

11 nucleotides

Bulged bases

6Q95|1|2|U|839, 6Q95|1|2|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q95|1|2|U|835
6Q95|1|2|G|836
6Q95|1|2|G|837
6Q95|1|2|G|838
6Q95|1|2|U|839
6Q95|1|2|C|840
6Q95|1|2|U|841
6Q95|1|2|C|848
6Q95|1|2|C|849
6Q95|1|2|U|850
6Q95|1|2|G|851

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain k

30S ribosomal protein S6

Chain w

30S ribosomal protein S18