HL_6Q95_121

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUGCCAGCGGUUCGGCCGGGCACUC

Length

26 nucleotides

Bulged bases

6Q95|1|2|U|1125, 6Q95|1|2|C|1129, 6Q95|1|2|U|1136, 6Q95|1|2|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q95|1|2|G|1124
6Q95|1|2|U|1125
6Q95|1|2|U|1126
6Q95|1|2|G|1127
6Q95|1|2|C|1128
6Q95|1|2|C|1129
6Q95|1|2|A|1130
6Q95|1|2|G|1131
6Q95|1|2|C|1132
6Q95|1|2|G|1133
6Q95|1|2|G|1134
6Q95|1|2|U|1135
6Q95|1|2|U|1136
6Q95|1|2|C|1137
6Q95|1|2|G|1138
6Q95|1|2|G|1139
6Q95|1|2|C|1140
6Q95|1|2|C|1141
6Q95|1|2|G|1142
6Q95|1|2|G|1143
6Q95|1|2|G|1144
6Q95|1|2|C|1145
6Q95|1|2|A|1146
6Q95|1|2|C|1147
6Q95|1|2|U|1148
6Q95|1|2|C|1149

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain n

30S ribosomal protein S9

Chain o

30S ribosomal protein S10