HL_6Q95_123

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCGGGCCAAGCCAGGAGGACACGCGAAACGC

Length

31 nucleotides

Bulged bases

6Q95|1|4|G|260, 6Q95|1|4|C|261, 6Q95|1|4|A|269, 6Q95|1|4|C|272, 6Q95|1|4|G|273, 6Q95|1|4|C|274, 6Q95|1|4|G|275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q95|1|4|G|251
6Q95|1|4|C|252
6Q95|1|4|G|253
6Q95|1|4|G|254
6Q95|1|4|G|255
6Q95|1|4|C|256
6Q95|1|4|C|257
6Q95|1|4|A|258
6Q95|1|4|A|259
6Q95|1|4|G|260
6Q95|1|4|C|261
6Q95|1|4|C|262
6Q95|1|4|A|263
6Q95|1|4|G|264
6Q95|1|4|G|265
6Q95|1|4|A|266
6Q95|1|4|G|267
6Q95|1|4|G|268
6Q95|1|4|A|269
6Q95|1|4|C|270
6Q95|1|4|A|271
6Q95|1|4|C|272
6Q95|1|4|G|273
6Q95|1|4|C|274
6Q95|1|4|G|275
6Q95|1|4|A|276
6Q95|1|4|A|277
6Q95|1|4|A|278
6Q95|1|4|C|279
6Q95|1|4|G|280
6Q95|1|4|C|281

Current chains

Chain 4

transfer-messenger RNA (tmRNA)

Nearby chains