HL_6Q97_004

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUUUCGACA

Length

10 nucleotides

Bulged bases

6Q97|1|1|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q97_004 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2061

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6Q97|1|1|U|135
6Q97|1|1|G|136
6Q97|1|1|U|137
6Q97|1|1|U|138
6Q97|1|1|U|139
6Q97|1|1|C|140
6Q97|1|1|G|141
6Q97|1|1|A|142
6Q97|1|1|C|143
6Q97|1|1|A|144

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23