6Q97 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6Q97_140 | 1/1/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_6Q97_113 | 1/1/80:106 | No text annotation | ||
| HL_6Q97_002 | 1/1/85:97 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_6Q97_003 | 1/1/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_6Q97_004 | 1/1/135:144 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_6Q97_005 | 1/1/155:171 | No text annotation | ||
| HL_6Q97_006 | 1/1/194:201 | No text annotation | homologous HL_7A0S_006 HL_30068.2 | |
| HL_6Q97_007 | 1/1/224:231 | No text annotation | geometric HL_3SKL_006 NA | |
| HL_6Q97_008 | 1/1/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_6Q97_009 | 1/1/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_01609.3 | |
| HL_6Q97_010 | 1/1/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_6Q97_011 | 1/1/378:396 | No text annotation | ||
| HL_6Q97_012 | 1/1/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_6Q97_013 | 1/1/462:468 | No text annotation | ||
| HL_6Q97_114 | 1/1/484:496 | No text annotation | ||
| HL_6Q97_014 | 1/1/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_6Q97_015 | 1/1/542:551 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_6Q97_016 | 1/1/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.8 | |
| HL_6Q97_017 | 1/1/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_6Q97_018 | 1/1/629:634 | GNRA | homologous HL_7A0S_020 HL_37824.7 | |
| HL_6Q97_019 | 1/1/641:647 | No text annotation | homologous HL_5J7L_153 HL_13529.1 | |
| HL_6Q97_020 | 1/1/710:721 | No text annotation | ||
| HL_6Q97_021 | 1/1/744:753 | No text annotation | homologous HL_5J7L_155 HL_88205.2 | |
| HL_6Q97_022 | 1/1/779:785 | No text annotation | homologous HL_7RQB_024 NA | |
| HL_6Q97_023 | 1/1/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_6Q97_024 | 1/1/885:891 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6Q97_141 | 1/1/955:962 | GNRA | homologous HL_5J7L_211 HL_37824.7 | |
| HL_6Q97_118 | 1/1/976:987 | No text annotation | ||
| HL_6Q97_026 | 1/1/977:986 | No text annotation | ||
| HL_6Q97_027 | 1/1/1059:1079 | No text annotation | ||
| HL_6Q97_028 | 1/1/1087:1102 | No text annotation | homologous HL_5J7L_162 NA | |
| HL_6Q97_142 | 1/1/1167:1182 | No text annotation | ||
| HL_6Q97_029 | 1/1/1171:1178 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_6Q97_030 | 1/1/1222:1227 | GNRA | homologous HL_7A0S_031 HL_37824.7 | |
| HL_6Q97_031 | 1/1/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.8 | |
| HL_6Q97_032 | 1/1/1324:1330 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_166 HL_57176.2 | |
| HL_6Q97_033 | 1/1/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6Q97_034 | 1/1/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6Q97_035 | 1/1/1451:1459 | Mini UNCG with extended bulge | geometric HL_5J7L_169 HL_22622.1 | |
| HL_6Q97_036 | 1/1/1489:1500 | No text annotation | ||
| HL_6Q97_037 | 1/1/1533:1538 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_6Q97_038 | 1/1/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_6Q97_039 | 1/1/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_89567.2 | |
| HL_6Q97_040 | 1/1/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_6Q97_041 | 1/1/1691:1696 | UNCG | geometric HL_4WF9_040 HL_34617.5 | |
| HL_6Q97_042 | 1/1/1726:1734 | No text annotation | ||
| HL_6Q97_043 | 1/1/1752:1756 | No text annotation | homologous HL_4WF9_042 HL_80709.3 | |
| HL_6Q97_044 | 1/1/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_6Q97_143 | 1/1/1798:1821 | No text annotation | ||
| HL_6Q97_045 | 1/1/1806:1811 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_6Q97_046 | 1/1/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.7 | |
| HL_6Q97_121 | 1/1/1907:1924 | No text annotation | ||
| HL_6Q97_047 | 1/1/1909:1922 | No text annotation | ||
| HL_6Q97_122 | 1/1/1947:1959 | No text annotation | geometric HL_5ID6_001 HL_69752.2 | |
| HL_6Q97_048 | 1/1/1949:1957 | No text annotation | homologous HL_4WF9_046 HL_20167.2 | |
| HL_6Q97_049 | 1/1/1992:1996 | No text annotation | ||
| HL_6Q97_050 | 1/1/2027:2036 | No text annotation | homologous HL_5J7L_183 HL_61996.2 | |
| HL_6Q97_123 | 1/1/2127:2161 | No text annotation | ||
| HL_6Q97_051 | 1/1/2138:2153 | No text annotation | ||
| HL_6Q97_052 | 1/1/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_6Q97_053 | 1/1/2246:2258 | No text annotation | ||
| HL_6Q97_054 | 1/1/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_6Q97_125 | 1/1/2304:2312 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_6Q97_056 | 1/1/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_6Q97_057 | 1/1/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_6Q97_058 | 1/1/2374:2379 | GNRA | homologous HL_4WF9_054 HL_37824.7 | |
| HL_6Q97_059 | 1/1/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_6Q97_060 | 1/1/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_6Q97_126 | 1/1/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.4 | |
| HL_6Q97_062 | 1/1/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_6Q97_063 | 1/1/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6Q97_064 | 1/1/2658:2663 | GNRA | geometric HL_5B2T_003 HL_37824.7 | |
| HL_6Q97_065 | 1/1/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_6Q97_066 | 1/1/2745:2759 | No text annotation | homologous HL_4WF9_062 HL_74055.2 | |
| HL_6Q97_067 | 1/1/2796:2799 | Mini UNCG | geometric HL_5U30_001 HL_48778.2 | |
| HL_6Q97_068 | 1/1/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_6Q97_069 | 1/1/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 | |
| HL_6Q97_070 | 1/2/11:23 | No text annotation | ||
| HL_6Q97_071 | 1/2/78:92 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_6Q97_072 | 1/2/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_6Q97_073 | 1/2/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_6Q97_074 | 1/2/207:212 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_6Q97_144 | 1/2/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_6Q97_076 | 1/2/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_6Q97_145 | 1/2/319:334 | No text annotation | ||
| HL_6Q97_077 | 1/2/322:332 | No text annotation | ||
| HL_6Q97_078 | 1/2/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_6Q97_079 | 1/2/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_6Q97_080 | 1/2/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_6Q97_081 | 1/2/462:470 | GNRA related | homologous HL_5J7L_012 HL_81538.2 | |
| HL_6Q97_131 | 1/2/522:527 | GNRA variation | homologous HL_4LFB_033 HL_37824.7 | |
| HL_6Q97_083 | 1/2/617:623 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_6Q97_132 | 1/2/688:699 | No text annotation | ||
| HL_6Q97_084 | 1/2/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_6Q97_085 | 1/2/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_6Q97_133 | 1/2/779:803 | No text annotation | ||
| HL_6Q97_086 | 1/2/785:797 | No text annotation | geometric HL_6CZR_088 NA | |
| HL_6Q97_087 | 1/2/840:846 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6Q97_134 | 1/2/887:910 | No text annotation | ||
| HL_6Q97_088 | 1/2/897:903 | No text annotation | geometric HL_4WSM_210 HL_59735.5 | |
| HL_6Q97_089 | 1/2/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_6Q97_090 | 1/2/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_6Q97_091 | 1/2/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_6Q97_092 | 1/2/1089:1096 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_6Q97_093 | 1/2/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_6Q97_094 | 1/2/1165:1171 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_6Q97_135 | 1/2/1263:1272 | No text annotation | geometric HL_8KAL_008 NA | |
| HL_6Q97_095 | 1/2/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_6Q97_096 | 1/2/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_6CZR_100 NA | |
| HL_6Q97_097 | 1/2/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_6Q97_098 | 1/2/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_6Q97_099 | 1/2/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_6Q97_136 | 1/3/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
| HL_6Q97_100 | 1/3/38:44 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_6Q97_101 | 1/3/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_6Q97_102 | 1/4/51:65 | No text annotation | ||
| HL_6Q97_146 | 1/4/58:75 | No text annotation | ||
| HL_6Q97_103 | 1/4/116:128 | No text annotation | ||
| HL_6Q97_138 | 1/4/147:168 | No text annotation | ||
| HL_6Q97_104 | 1/4/152:163 | No text annotation | ||
| HL_6Q97_105 | 1/4/253:278 | No text annotation | ||
| HL_6Q97_106 | 1/4/340:348 | T-loop with 2 stacked bulged bases | homologous HL_4V8Q_110 HL_28252.8 | |
| HL_6Q97_107 | 1/7/13:23 | No text annotation | homologous HL_5UD5_001 HL_48417.5 | |
| HL_6Q97_108 | 1/7/32:40 | tRNA anticodon loop | homologous HL_4WT8_216 HL_06059.6 | |
| HL_6Q97_109 | 1/7/54:62 | T-loop with 2 stacked bulged bases | homologous HL_3WFS_003 HL_28252.8 | |
| HL_6Q97_110 | 1/8/30:42 | No text annotation | homologous HL_2BTE_002 NA | |
| HL_6Q97_111 | 1/8/54:62 | T-loop with 2 stacked bulged bases | homologous HL_3WFS_003 HL_28252.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6Q97_112 | No text annotation | ||
| HL_6Q97_001 | No text annotation | ||
| HL_6Q97_115 | No text annotation | ||
| HL_6Q97_116 | No text annotation | ||
| HL_6Q97_117 | No text annotation | ||
| HL_6Q97_025 | No text annotation | ||
| HL_6Q97_119 | No text annotation | ||
| HL_6Q97_120 | No text annotation | ||
| HL_6Q97_124 | No text annotation | ||
| HL_6Q97_055 | No text annotation | ||
| HL_6Q97_061 | tRNA anticodon loop | ||
| HL_6Q97_127 | No text annotation | ||
| HL_6Q97_128 | No text annotation | ||
| HL_6Q97_129 | No text annotation | ||
| HL_6Q97_075 | tRNA D-loop | ||
| HL_6Q97_130 | No text annotation | ||
| HL_6Q97_082 | No text annotation | ||
| HL_6Q97_137 | No text annotation | ||
| HL_6Q97_139 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6Q97_001 | 1/1/24:30, 1/1/510:516 | Triple sheared with non-canonical cWW | geometric IL_7A0S_001 IL_04021.2 | |
| IL_6Q97_002 | 1/1/35:38, 1/1/441:445 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_85033.2 | |
| IL_6Q97_003 | 1/1/42:44, 1/1/434:437 | Minor groove platform with extra cWW | homologous IL_4WF9_003 IL_90351.1 | |
| IL_6Q97_181 | 1/1/55:77, 1/1/109:115 | No text annotation | ||
| IL_6Q97_004 | 1/1/79:85, 1/1/97:107 | No text annotation | geometric IL_8CRE_436 IL_89047.1 | |
| IL_6Q97_005 | 1/1/188:194, 1/1/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_6Q97_006 | 1/1/239:245, 1/1/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_6Q97_007 | 1/1/269:271, 1/1/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_6Q97_182 | 1/1/271:287, 1/1/353:366 | No text annotation | ||
| IL_6Q97_008 | 1/1/293:295, 1/1/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6Q97_009 | 1/1/481:484, 1/1/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_6Q97_010 | 1/1/484:486, 1/1/495:496 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_6Q97_011 | 1/1/486:487, 1/1/493:495 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_6Q97_012 | 1/1/536:539, 1/1/554:557 | Double sheared | homologous IL_4WF9_016 IL_09705.15 | |
| IL_6Q97_013 | 1/1/564:566, 1/1/575:577 | Isolated non-canonical cWW pair | geometric IL_5MWI_008 NA | |
| IL_6Q97_014 | 1/1/606:611, 1/1/617:622 | No text annotation | ||
| IL_6Q97_015 | 1/1/671:673, 1/1/808:809 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_6Q97_246 | 1/1/674:678, 1/1/799:807 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 IL_54041.2 | |
| IL_6Q97_017 | 1/1/697:698, 1/1/763:765 | Single bulged A | geometric IL_4V9F_025 IL_31462.6 | |
| IL_6Q97_018 | 1/1/702:707, 1/1/724:730 | No text annotation | geometric IL_4V88_462 NA | |
| IL_6Q97_019 | 1/1/738:740, 1/1/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_6Q97_020 | 1/1/775:777, 1/1/787:791 | Multiple bulged bases | geometric IL_4WF9_027 IL_06549.2 | |
| IL_6Q97_021 | 1/1/815:817, 1/1/1191:1192 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_6Q97_022 | 1/1/837:838, 1/1/940:942 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_6Q97_023 | 1/1/844:847, 1/1/933:934 | Other IL | geometric IL_5J7L_267 IL_90729.1 | |
| IL_6Q97_187 | 1/1/844:848, 1/1/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_6Q97_024 | 1/1/847:848, 1/1/930:933 | Stack outside cWW | homologous IL_5J7L_268 IL_56987.1 | |
| IL_6Q97_025 | 1/1/848:851, 1/1/926:930 | No text annotation | ||
| IL_6Q97_247 | 1/1/852:854, 1/1/924:925 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6Q97_027 | 1/1/854:855, 1/1/922:924 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6Q97_188 | 1/1/854:862, 1/1/915:924 | No text annotation | ||
| IL_6Q97_028 | 1/1/856:862, 1/1/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
| IL_6Q97_029 | 1/1/862:863, 1/1/913:915 | Single bulged G | geometric IL_5J7L_271 IL_00225.13 | |
| IL_6Q97_030 | 1/1/863:869, 1/1/908:913 | No text annotation | ||
| IL_6Q97_189 | 1/1/863:872, 1/1/905:913 | No text annotation | ||
| IL_6Q97_031 | 1/1/870:872, 1/1/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_6Q97_032 | 1/1/875:879, 1/1/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_6Q97_033 | 1/1/880:883, 1/1/893:897 | Tandem non-canonical cWW pairs | geometric IL_2IL9_001 NA | |
| IL_6Q97_034 | 1/1/994:996, 1/1/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6Q97_035 | 1/1/997:1002, 1/1/1153:1158 | UAA/GAN with extra cWW | geometric IL_7A0S_098 IL_49767.8 | |
| IL_6Q97_036 | 1/1/1004:1011, 1/1/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_6Q97_037 | 1/1/1011:1013, 1/1/1149:1150 | Single bulged U | geometric IL_5TBW_146 NA | |
| IL_6Q97_191 | 1/1/1011:1017, 1/1/1146:1150 | No text annotation | ||
| IL_6Q97_038 | 1/1/1013:1017, 1/1/1146:1149 | No text annotation | ||
| IL_6Q97_039 | 1/1/1017:1024, 1/1/1140:1146 | No text annotation | ||
| IL_6Q97_040 | 1/1/1024:1030, 1/1/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_6Q97_041 | 1/1/1031:1034, 1/1/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6Q97_042 | 1/1/1038:1042, 1/1/1114:1117 | No text annotation | ||
| IL_6Q97_043 | 1/1/1042:1043, 1/1/1112:1114 | Single stack bend | geometric IL_7RQB_024 NA | |
| IL_6Q97_044 | 1/1/1043:1052, 1/1/1107:1112 | No text annotation | ||
| IL_6Q97_045 | 1/1/1196:1198, 1/1/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_6Q97_192 | 1/1/1202:1215, 1/1/1234:1243 | No text annotation | ||
| IL_6Q97_248 | 1/1/1262:1269, 1/1/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_6Q97_047 | 1/1/1310:1313, 1/1/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6Q97_249 | 1/1/1319:1323, 1/1/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_6Q97_049 | 1/1/1350:1355, 1/1/1376:1381 | UAA/GAN with extra cWW | geometric IL_7A0S_098 IL_49767.8 | |
| IL_6Q97_050 | 1/1/1357:1361, 1/1/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_6Q97_250 | 1/1/1413:1416, 1/1/1582:1589 | No text annotation | ||
| IL_6Q97_052 | 1/1/1417:1421, 1/1/1578:1581 | No text annotation | ||
| IL_6Q97_053 | 1/1/1421:1422, 1/1/1576:1578 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_6Q97_251 | 1/1/1424:1429, 1/1/1564:1574 | No text annotation | ||
| IL_6Q97_054 | 1/1/1432:1435, 1/1/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_6Q97_055 | 1/1/1437:1440, 1/1/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_6Q97_056 | 1/1/1450:1451, 1/1/1459:1461 | Single bulged U | homologous IL_5J7L_298 IL_89505.4 | |
| IL_6Q97_057 | 1/1/1468:1471, 1/1/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_6Q97_197 | 1/1/1472:1478, 1/1/1513:1519 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4WF9_031 IL_29198.2 | |
| IL_6Q97_059 | 1/1/1481:1482, 1/1/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_6Q97_060 | 1/1/1526:1530, 1/1/1541:1546 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_6Q97_198 | 1/1/1526:1532, 1/1/1539:1546 | No text annotation | ||
| IL_6Q97_061 | 1/1/1651:1656, 1/1/2004:2006 | No text annotation | homologous IL_7A0S_059 IL_12566.4 | |
| IL_6Q97_252 | 1/1/1663:1669, 1/1/1993:1997 | No text annotation | ||
| IL_6Q97_200 | 1/1/1686:1691, 1/1/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_6Q97_063 | 1/1/1712:1718, 1/1/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_6Q97_064 | 1/1/1720:1724, 1/1/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_6Q97_065 | 1/1/1768:1771, 1/1/1980:1984 | Tandem non-canonical cWW pairs | geometric IL_402D_001 IL_77658.1 | |
| IL_6Q97_066 | 1/1/1798:1806, 1/1/1811:1821 | No text annotation | ||
| IL_6Q97_067 | 1/1/1837:1840, 1/1/1902:1903 | Minor groove platform, major groove intercalation | geometric IL_7A0S_066 IL_95583.2 | |
| IL_6Q97_068 | 1/1/1840:1842, 1/1/1898:1902 | No text annotation | ||
| IL_6Q97_253 | 1/1/1841:1844, 1/1/1896:1901 | No text annotation | geometric IL_1GID_008 NA | |
| IL_6Q97_069 | 1/1/1846:1849, 1/1/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.4 | |
| IL_6Q97_254 | 1/1/1851:1860, 1/1/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_6Q97_070 | 1/1/1860:1862, 1/1/1881:1882 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_6Q97_071 | 1/1/1862:1863, 1/1/1879:1881 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_6Q97_072 | 1/1/1864:1867, 1/1/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_6Q97_073 | 1/1/1907:1909, 1/1/1922:1924 | No text annotation | ||
| IL_6Q97_255 | 1/1/1933:1945, 1/1/1961:1967 | No text annotation | ||
| IL_6Q97_075 | 1/1/2050:2052, 1/1/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6Q97_076 | 1/1/2054:2056, 1/1/2612:2615 | No text annotation | homologous IL_4WF9_079 IL_83389.2 | |
| IL_6Q97_077 | 1/1/2067:2072, 1/1/2437:2443 | No text annotation | ||
| IL_6Q97_205 | 1/1/2067:2073, 1/1/2436:2443 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_6Q97_078 | 1/1/2079:2083, 1/1/2236:2241 | Triple sheared | geometric IL_4WFL_001 IL_17948.2 | |
| IL_6Q97_256 | 1/1/2085:2088, 1/1/2231:2234 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_6Q97_257 | 1/1/2097:2101, 1/1/2189:2192 | No text annotation | ||
| IL_6Q97_080 | 1/1/2100:2108, 1/1/2182:2189 | No text annotation | ||
| IL_6Q97_207 | 1/1/2101:2121, 1/1/2177:2189 | No text annotation | ||
| IL_6Q97_081 | 1/1/2108:2121, 1/1/2177:2182 | No text annotation | ||
| IL_6Q97_082 | 1/1/2124:2127, 1/1/2161:2174 | No text annotation | ||
| IL_6Q97_083 | 1/1/2202:2204, 1/1/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_6Q97_208 | 1/1/2295:2299, 1/1/2317:2337 | No text annotation | ||
| IL_6Q97_084 | 1/1/2350:2355, 1/1/2362:2367 | No text annotation | ||
| IL_6Q97_085 | 1/1/2396:2400, 1/1/2417:2420 | No text annotation | ||
| IL_6Q97_086 | 1/1/2400:2403, 1/1/2414:2417 | No text annotation | ||
| IL_6Q97_087 | 1/1/2456:2459, 1/1/2493:2495 | No text annotation | homologous IL_5J7L_336 NA | |
| IL_6Q97_088 | 1/1/2459:2461, 1/1/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 IL_51387.2 | |
| IL_6Q97_089 | 1/1/2466:2470, 1/1/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_6Q97_090 | 1/1/2507:2512, 1/1/2574:2582 | No text annotation | ||
| IL_6Q97_091 | 1/1/2512:2513, 1/1/2571:2574 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_6Q97_092 | 1/1/2513:2515, 1/1/2570:2571 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6Q97_093 | 1/1/2515:2516, 1/1/2568:2570 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_6Q97_094 | 1/1/2521:2523, 1/1/2540:2544 | No text annotation | ||
| IL_6Q97_095 | 1/1/2524:2526, 1/1/2538:2539 | Single stack bend | geometric IL_5J7L_249 IL_90729.1 | |
| IL_6Q97_096 | 1/1/2526:2527, 1/1/2536:2538 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_6Q97_258 | 1/1/2591:2593, 1/1/2600:2603 | Other IL | homologous IL_7A0S_092 IL_08770.1 | |
| IL_6Q97_099 | 1/1/2636:2641, 1/1/2773:2782 | No text annotation | ||
| IL_6Q97_100 | 1/1/2647:2648, 1/1/2672:2674 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_6Q97_101 | 1/1/2652:2658, 1/1/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 IL_16458.4 | |
| IL_6Q97_102 | 1/1/2676:2677, 1/1/2730:2732 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6Q97_259 | 1/1/2680:2684, 1/1/2725:2727 | C-loop | homologous IL_4WF9_101 IL_63596.11 | |
| IL_6Q97_212 | 1/1/2684:2691, 1/1/2718:2725 | No text annotation | ||
| IL_6Q97_104 | 1/1/2686:2691, 1/1/2718:2723 | No text annotation | ||
| IL_6Q97_105 | 1/1/2695:2699, 1/1/2708:2714 | No text annotation | ||
| IL_6Q97_213 | 1/1/2695:2701, 1/1/2706:2714 | No text annotation | ||
| IL_6Q97_106 | 1/1/2737:2742, 1/1/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_6Q97_214 | 1/1/2792:2796, 1/1/2799:2804 | Partly complementary | geometric IL_7VYX_008 IL_49751.4 | |
| IL_6Q97_107 | 1/1/2794:2796, 1/1/2799:2802 | No text annotation | ||
| IL_6Q97_108 | 1/1/2806:2811, 1/1/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_6Q97_215 | 1/1/2841:2846, 1/1/2870:2876 | No text annotation | ||
| IL_6Q97_109 | 1/1/2843:2846, 1/1/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_6Q97_110 | 1/1/2847:2852, 1/1/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_6Q97_111 | 1/2/44:45, 1/2/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.6 | |
| IL_6Q97_217 | 1/2/46:52, 1/2/359:395 | No text annotation | ||
| IL_6Q97_112 | 1/2/47:52, 1/2/359:361 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
| IL_6Q97_113 | 1/2/54:56, 1/2/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_6Q97_114 | 1/2/63:66, 1/2/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_6Q97_115 | 1/2/67:69, 1/2/99:102 | Minor groove platform with extra cWW | geometric IL_5J7L_006 IL_90351.1 | |
| IL_6Q97_260 | 1/2/70:73, 1/2/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_6Q97_261 | 1/2/75:78, 1/2/92:95 | No text annotation | ||
| IL_6Q97_118 | 1/2/128:132, 1/2/230:233 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_6Q97_218 | 1/2/128:136, 1/2/227:233 | No text annotation | ||
| IL_6Q97_119 | 1/2/132:136, 1/2/227:230 | Minor groove platform related | geometric IL_5J7L_010 IL_64231.5 | |
| IL_6Q97_120 | 1/2/144:146, 1/2/176:178 | Isolated cWH basepair | geometric IL_5J7L_011 IL_10167.6 | |
| IL_6Q97_121 | 1/2/146:153, 1/2/168:176 | No text annotation | ||
| IL_6Q97_122 | 1/2/203:207, 1/2/212:214 | No text annotation | homologous IL_5J7L_013 IL_66997.2 | |
| IL_6Q97_123 | 1/2/242:249, 1/2/275:284 | No text annotation | ||
| IL_6Q97_262 | 1/2/242:252, 1/2/274:284 | No text annotation | ||
| IL_6Q97_124 | 1/2/249:252, 1/2/274:275 | No text annotation | geometric IL_4LFB_012 IL_47074.2 | |
| IL_6Q97_125 | 1/2/292:293, 1/2/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_6Q97_220 | 1/2/292:295, 1/2/302:308 | No text annotation | ||
| IL_6Q97_126 | 1/2/319:322, 1/2/332:334 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_6Q97_127 | 1/2/370:375, 1/2/389:391 | No text annotation | ||
| IL_6Q97_128 | 1/2/375:376, 1/2/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_6Q97_263 | 1/2/409:416, 1/2/427:433 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
| IL_6Q97_130 | 1/2/440:442, 1/2/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_6Q97_131 | 1/2/446:450, 1/2/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_6Q97_132 | 1/2/450:454, 1/2/479:483 | No text annotation | ||
| IL_6Q97_133 | 1/2/454:455, 1/2/477:479 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_6Q97_264 | 1/2/503:511, 1/2/540:542 | No text annotation | ||
| IL_6Q97_134 | 1/2/504:511, 1/2/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_6Q97_135 | 1/2/515:521, 1/2/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_6Q97_223 | 1/2/580:584, 1/2/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_6Q97_137 | 1/2/594:596, 1/2/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_6Q97_265 | 1/2/597:598, 1/2/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_6CZR_137 NA | |
| IL_6Q97_139 | 1/2/605:612, 1/2/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_6Q97_140 | 1/2/654:655, 1/2/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_6Q97_141 | 1/2/658:660, 1/2/745:748 | No text annotation | geometric IL_4P3T_002 NA | |
| IL_6Q97_142 | 1/2/661:667, 1/2/739:744 | No text annotation | ||
| IL_6Q97_227 | 1/2/673:678, 1/2/712:717 | No text annotation | homologous IL_5J7L_034 NA | |
| IL_6Q97_144 | 1/2/684:688, 1/2/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_6Q97_266 | 1/2/772:778, 1/2/804:807 | No text annotation | ||
| IL_6Q97_146 | 1/2/779:783, 1/2/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_6Q97_147 | 1/2/826:829, 1/2/857:874 | No text annotation | ||
| IL_6Q97_267 | 1/2/826:831, 1/2/855:874 | No text annotation | ||
| IL_6Q97_148 | 1/2/922:923, 1/2/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.6 | |
| IL_6Q97_268 | 1/2/925:927, 1/2/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_6Q97_269 | 1/2/933:935, 1/2/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_6Q97_232 | 1/2/950:954, 1/2/1226:1231 | Partly complementary | geometric IL_7VYX_008 IL_49751.4 | |
| IL_6Q97_151 | 1/2/953:954, 1/2/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_6Q97_152 | 1/2/998:1000, 1/2/1040:1043 | No text annotation | geometric IL_4P3T_002 NA | |
| IL_6Q97_270 | 1/2/1001:1010, 1/2/1019:1039 | No text annotation | ||
| IL_6Q97_153 | 1/2/1048:1050, 1/2/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_6Q97_271 | 1/2/1048:1056, 1/2/1204:1209 | No text annotation | ||
| IL_6Q97_154 | 1/2/1050:1056, 1/2/1204:1208 | No text annotation | homologous IL_5J7L_047 NA | |
| IL_6Q97_155 | 1/2/1057:1059, 1/2/1198:1203 | No text annotation | ||
| IL_6Q97_235 | 1/2/1057:1063, 1/2/1193:1203 | No text annotation | ||
| IL_6Q97_156 | 1/2/1059:1063, 1/2/1193:1198 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6Q97_236 | 1/2/1073:1086, 1/2/1099:1102 | No text annotation | ||
| IL_6Q97_157 | 1/2/1124:1128, 1/2/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_6Q97_158 | 1/2/1129:1132, 1/2/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_6Q97_159 | 1/2/1247:1253, 1/2/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_6Q97_160 | 1/2/1255:1258, 1/2/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_6Q97_161 | 1/2/1259:1263, 1/2/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_6Q97_162 | 1/2/1303:1308, 1/2/1329:1334 | No text annotation | geometric IL_5J7L_057 IL_85536.2 | |
| IL_6Q97_238 | 1/2/1303:1314, 1/2/1323:1334 | No text annotation | ||
| IL_6Q97_163 | 1/2/1399:1401, 1/2/1501:1504 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_6Q97_164 | 1/2/1401:1404, 1/2/1497:1501 | No text annotation | homologous IL_5J7L_059 IL_65718.4 | |
| IL_6Q97_239 | 1/2/1405:1407, 1/2/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_6Q97_240 | 1/2/1407:1421, 1/2/1479:1494 | No text annotation | ||
| IL_6Q97_166 | 1/2/1412:1416, 1/2/1484:1488 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6Q97_167 | 1/2/1416:1421, 1/2/1479:1484 | No text annotation | ||
| IL_6Q97_168 | 1/2/1429:1435, 1/2/1466:1471 | No text annotation | ||
| IL_6Q97_169 | 1/2/1440:1449, 1/2/1454:1461 | No text annotation | ||
| IL_6Q97_170 | 1/2/1508:1510, 1/2/1525:1528 | No text annotation | geometric IL_4WSM_372 IL_09990.4 | |
| IL_6Q97_272 | 1/2/1508:1512, 1/2/1523:1528 | No text annotation | ||
| IL_6Q97_171 | 1/3/17:21, 1/3/62:67 | No text annotation | homologous IL_7A0S_110 NA | |
| IL_6Q97_172 | 1/3/23:28, 1/3/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_6Q97_273 | 1/3/30:31, 1/3/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_6Q97_174 | 1/3/34:38, 1/3/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_6Q97_274 | 1/3/71:81, 1/3/95:105 | No text annotation | ||
| IL_6Q97_244 | 1/4/26:40, 1/4/314:327 | No text annotation | ||
| IL_6Q97_175 | 1/4/37:41, 1/4/313:318 | Multiple bulged bases | geometric IL_6JXM_001 IL_84476.1 | |
| IL_6Q97_176 | 1/4/113:115, 1/4/129:132 | No text annotation | ||
| IL_6Q97_177 | 1/4/141:146, 1/4/169:178 | No text annotation | ||
| IL_6Q97_178 | 1/4/147:152, 1/4/163:168 | No text annotation | ||
| IL_6Q97_180 | 1/8/51:53, 1/8/63:65 | Isolated non-canonical cWW pair | homologous IL_4V9K_064 IL_87907.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6Q97_016 | No text annotation | ||
| IL_6Q97_183 | No text annotation | ||
| IL_6Q97_184 | Tandem non-canonical cWW pairs | ||
| IL_6Q97_185 | Triple sheared with non-canonical cWW | ||
| IL_6Q97_186 | No text annotation | ||
| IL_6Q97_026 | No text annotation | ||
| IL_6Q97_190 | Isolated cWS basepair | ||
| IL_6Q97_046 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_6Q97_193 | No text annotation | ||
| IL_6Q97_048 | C-loop with extra cWW pair | ||
| IL_6Q97_051 | No text annotation | ||
| IL_6Q97_194 | No text annotation | ||
| IL_6Q97_195 | Isolated non-canonical cWW pair | ||
| IL_6Q97_196 | No text annotation | ||
| IL_6Q97_058 | No text annotation | ||
| IL_6Q97_199 | No text annotation | ||
| IL_6Q97_062 | No text annotation | ||
| IL_6Q97_201 | Partly complementary | ||
| IL_6Q97_202 | No text annotation | ||
| IL_6Q97_203 | No text annotation | ||
| IL_6Q97_204 | No text annotation | ||
| IL_6Q97_074 | No text annotation | ||
| IL_6Q97_079 | No text annotation | ||
| IL_6Q97_206 | No text annotation | ||
| IL_6Q97_209 | No text annotation | ||
| IL_6Q97_210 | No text annotation | ||
| IL_6Q97_211 | No text annotation | ||
| IL_6Q97_097 | No text annotation | ||
| IL_6Q97_098 | Tandem non-canonical cWW pairs | ||
| IL_6Q97_103 | No text annotation | ||
| IL_6Q97_216 | Partly complementary | ||
| IL_6Q97_116 | No text annotation | ||
| IL_6Q97_117 | No text annotation | ||
| IL_6Q97_219 | No text annotation | ||
| IL_6Q97_129 | No text annotation | ||
| IL_6Q97_221 | No text annotation | ||
| IL_6Q97_222 | No text annotation | ||
| IL_6Q97_136 | tSH-tHW-tHS-cWW | ||
| IL_6Q97_224 | No text annotation | ||
| IL_6Q97_138 | 8-nt loop receptor | ||
| IL_6Q97_225 | No text annotation | ||
| IL_6Q97_226 | No text annotation | ||
| IL_6Q97_143 | No text annotation | ||
| IL_6Q97_228 | No text annotation | ||
| IL_6Q97_145 | No text annotation | ||
| IL_6Q97_229 | No text annotation | ||
| IL_6Q97_230 | No text annotation | ||
| IL_6Q97_149 | Isolated non-canonical cWW pair | ||
| IL_6Q97_231 | No text annotation | ||
| IL_6Q97_150 | No text annotation | ||
| IL_6Q97_233 | No text annotation | ||
| IL_6Q97_234 | No text annotation | ||
| IL_6Q97_237 | No text annotation | ||
| IL_6Q97_165 | No text annotation | ||
| IL_6Q97_241 | No text annotation | ||
| IL_6Q97_242 | No text annotation | ||
| IL_6Q97_173 | No text annotation | ||
| IL_6Q97_243 | No text annotation | ||
| IL_6Q97_245 | No text annotation | ||
| IL_6Q97_179 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6Q97_001 | 1/1/30:31, 1/1/474:481, 1/1/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6Q97_021 | 1/1/30:31, 1/1/474:484, 1/1/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_6Q97_022 | 1/1/31:35, 1/1/445:462, 1/1/468:474 | No text annotation | ||
| J3_6Q97_043 | 1/1/55:57, 1/1/70:76, 1/1/110:115 | No text annotation | ||
| J3_6Q97_002 | 1/1/56:57, 1/1/70:76, 1/1/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_6Q97_024 | 1/1/297:301, 1/1/316:325, 1/1/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_6Q97_025 | 1/1/601:604, 1/1/624:628, 1/1/635:656 | No text annotation | ||
| J3_6Q97_003 | 1/1/682:689, 1/1/773:775, 1/1/791:795 | No text annotation | ||
| J3_6Q97_044 | 1/1/682:689, 1/1/773:777, 1/1/787:795 | No text annotation | ||
| J3_6Q97_004 | 1/1/698:701, 1/1/731:736, 1/1/760:763 | No text annotation | homologous J3_5J7L_039 J3_44724.7 | |
| J3_6Q97_027 | 1/1/698:702, 1/1/730:736, 1/1/760:763 | No text annotation | ||
| J3_6Q97_028 | 1/1/1043:1059, 1/1/1079:1087, 1/1/1102:1112 | No text annotation | ||
| J3_6Q97_005 | 1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_6Q97_029 | 1/1/1306:1309, 1/1/1605:1612, 1/1/1619:1622 | No text annotation | ||
| J3_6Q97_030 | 1/1/1344:1355, 1/1/1376:1387, 1/1/1400:1403 | No text annotation | ||
| J3_6Q97_007 | 1/1/1663:1674, 1/1/1990:1992, 1/1/1996:1997 | No text annotation | ||
| J3_6Q97_045 | 1/1/2091:2093, 1/1/2196:2200, 1/1/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_6Q97_009 | 1/1/2295:2299, 1/1/2317:2323, 1/1/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_6Q97_010 | 1/1/2516:2520, 1/1/2545:2549, 1/1/2559:2568 | No text annotation | ||
| J3_6Q97_046 | 1/1/2812:2815, 1/1/2831:2839, 1/1/2878:2888 | No text annotation | ||
| J3_6Q97_011 | 1/2/46:47, 1/2/361:369, 1/2/392:395 | No text annotation | ||
| J3_6Q97_012 | 1/2/586:588, 1/2/651:654, 1/2/754:755 | No text annotation | geometric J3_4LFB_011 J3_56052.5 | |
| J3_6Q97_047 | 1/2/586:588, 1/2/651:655, 1/2/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_6Q97_034 | 1/2/662:673, 1/2/717:725, 1/2/732:743 | No text annotation | ||
| J3_6Q97_013 | 1/2/670:673, 1/2/717:725, 1/2/732:736 | No text annotation | geometric J3_4V88_033 NA | |
| J3_6Q97_035 | 1/2/936:939, 1/2/1344:1352, 1/2/1370:1379 | No text annotation | ||
| J3_6Q97_014 | 1/2/941:946, 1/2/1235:1237, 1/2/1337:1342 | No text annotation | ||
| J3_6Q97_015 | 1/2/955:962, 1/2/973:984, 1/2/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_6Q97_048 | 1/2/990:997, 1/2/1044:1047, 1/2/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_6Q97_017 | 1/2/1063:1068, 1/2/1107:1113, 1/2/1187:1193 | No text annotation | geometric J3_4LFB_007 J3_08394.3 | |
| J3_6Q97_049 | 1/2/1063:1070, 1/2/1105:1113, 1/2/1187:1193 | No text annotation | ||
| J3_6Q97_018 | 1/2/1073:1076, 1/2/1081:1087, 1/2/1098:1102 | No text annotation | ||
| J3_6Q97_050 | 1/2/1116:1118, 1/2/1155:1162, 1/2/1174:1184 | No text annotation | ||
| J3_6Q97_019 | 1/2/1237:1241, 1/2/1296:1303, 1/2/1334:1337 | No text annotation | homologous J3_6CZR_026 NA | |
| J3_6Q97_020 | 1/3/10:16, 1/3/68:70, 1/3/106:110 | No text annotation | geometric J3_5J7L_049 J3_89095.1 | |
| J3_6Q97_041 | 1/4/6:25, 1/4/328:336, 1/4/352:354 | No text annotation | ||
| J3_6Q97_042 | 1/8/6:28, 1/8/44:51, 1/8/65:68 | No text annotation | ||
| J4_6Q97_012 | 1/1/266:269, 1/1/370:375, 1/1/399:406, 1/1/421:426 | No text annotation | ||
| J4_6Q97_002 | 1/1/1270:1276, 1/1/1294:1295, 1/1/1645:1648, 1/1/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_6Q97_003 | 1/1/1313:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_6Q97_013 | 1/1/1444:1445, 1/1/1466:1467, 1/1/1525:1526, 1/1/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_6Q97_004 | 1/1/1444:1446, 1/1/1465:1468, 1/1/1524:1526, 1/1/1546:1547 | No text annotation | ||
| J4_6Q97_014 | 1/1/1772:1776, 1/1/1788:1794, 1/1/1825:1830, 1/1/1975:1979 | No text annotation | ||
| J4_6Q97_015 | 1/1/1833:1837, 1/1/1903:1907, 1/1/1924:1933, 1/1/1967:1972 | No text annotation | ||
| J4_6Q97_007 | 1/1/2642:2647, 1/1/2674:2676, 1/1/2732:2735, 1/1/2769:2772 | No text annotation | ||
| J4_6Q97_008 | 1/2/115:122, 1/2/239:240, 1/2/286:289, 1/2/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_6Q97_009 | 1/2/142:144, 1/2/178:186, 1/2/191:199, 1/2/218:221 | No text annotation | ||
| J4_6Q97_010 | 1/2/575:579, 1/2/762:769, 1/2/810:821, 1/2/879:880 | No text annotation | ||
| J4_6Q97_016 | 1/7/7:10, 1/7/26:28, 1/7/44:50, 1/7/66:67 | tRNA junction | homologous J4_1U0B_001 J4_40477.1 | |
| J5_6Q97_001 | 1/1/531:533, 1/1/560:564, 1/1/577:579, 1/1/1261:1262, 1/1/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_6Q97_012 | 1/1/582:590, 1/1/667:671, 1/1/809:812, 1/1/1195:1198, 1/1/1247:1258 | No text annotation | ||
| J5_6Q97_013 | 1/1/1663:1682, 1/1/1706:1707, 1/1/1751:1752, 1/1/1756:1764, 1/1/1988:1997 | No text annotation | ||
| J5_6Q97_014 | 1/1/1669:1682, 1/1/1706:1707, 1/1/1751:1752, 1/1/1756:1764, 1/1/1988:1993 | No text annotation | ||
| J5_6Q97_015 | 1/1/2054:2064, 1/1/2446:2459, 1/1/2493:2512, 1/1/2574:2588, 1/1/2606:2615 | No text annotation | ||
| J5_6Q97_016 | 1/1/2056:2064, 1/1/2446:2459, 1/1/2493:2512, 1/1/2574:2588, 1/1/2606:2612 | No text annotation | ||
| J5_6Q97_017 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2282, 1/1/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J5_6Q97_018 | 1/1/2282:2289, 1/1/2343:2347, 1/1/2370:2372, 1/1/2381:2395, 1/1/2421:2427 | No text annotation | ||
| J5_6Q97_009 | 1/2/36:39, 1/2/403:406, 1/2/436:440, 1/2/497:500, 1/2/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_6Q97_010 | 1/2/36:39, 1/2/403:406, 1/2/436:442, 1/2/492:500, 1/2/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_6Q97_011 | 1/2/58:61, 1/2/106:113, 1/2/314:316, 1/2/337:340, 1/2/349:354 | No text annotation | ||
| J7_6Q97_001 | 1/1/815:822, 1/1/835:837, 1/1/942:949, 1/1/968:976, 1/1/987:992, 1/1/1162:1164, 1/1/1185:1192 | No text annotation | ||
| J8_6Q97_001 | 1/1/8:19, 1/1/521:531, 1/1/2018:2024, 1/1/2039:2043, 1/1/2625:2635, 1/1/2783:2791, 1/1/2805:2811, 1/1/2889:2895 | No text annotation | ||
| J8_6Q97_002 | 1/1/45:54, 1/1/116:121, 1/1/130:134, 1/1/145:150, 1/1/176:186, 1/1/210:237, 1/1/260:266, 1/1/426:433 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6Q97_023 | No text annotation | ||
| J3_6Q97_026 | No text annotation | ||
| J3_6Q97_006 | No text annotation | ||
| J3_6Q97_008 | No text annotation | ||
| J3_6Q97_031 | No text annotation | ||
| J3_6Q97_032 | No text annotation | ||
| J3_6Q97_033 | No text annotation | ||
| J3_6Q97_036 | No text annotation | ||
| J3_6Q97_016 | No text annotation | ||
| J3_6Q97_037 | No text annotation | ||
| J3_6Q97_038 | No text annotation | ||
| J3_6Q97_039 | No text annotation | ||
| J3_6Q97_040 | No text annotation | ||
| J4_6Q97_001 | No text annotation | ||
| J4_6Q97_005 | No text annotation | ||
| J4_6Q97_006 | No text annotation | ||
| J4_6Q97_011 | No text annotation | ||
| J5_6Q97_002 | No text annotation | ||
| J5_6Q97_003 | No text annotation | ||
| J5_6Q97_004 | No text annotation | ||
| J5_6Q97_005 | No text annotation | ||
| J5_6Q97_006 | No text annotation | ||
| J5_6Q97_007 | No text annotation | ||
| J5_6Q97_008 | No text annotation |
Coloring options: