HL_6Q97_047

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CG(PSU)AAC(3TD)A(PSU)AACGG

Length

14 nucleotides

Bulged bases

6Q97|1|1|A|1913, 6Q97|1|1|C|1914, 6Q97|1|1|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|1|C|1909
6Q97|1|1|G|1910
6Q97|1|1|PSU|1911
6Q97|1|1|A|1912
6Q97|1|1|A|1913
6Q97|1|1|C|1914
6Q97|1|1|3TD|1915
6Q97|1|1|A|1916
6Q97|1|1|PSU|1917
6Q97|1|1|A|1918
6Q97|1|1|A|1919
6Q97|1|1|C|1920
6Q97|1|1|G|1921
6Q97|1|1|G|1922

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 5

SsrA-binding protein

Chain 7

Transfer RNA; tRNA