HL_6Q97_050
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUG(6MZ)AGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 6Q97|1|1|A|2031, 6Q97|1|1|G|2032, 6Q97|1|1|U|2034, 6Q97|1|1|G|2035
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q97_050 not in the Motif Atlas
- Homologous match to HL_5J7L_183
- Geometric discrepancy: 0.2081
- The information below is about HL_5J7L_183
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_61996.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6Q97|1|1|G|2027
6Q97|1|1|U|2028
6Q97|1|1|G|2029
6Q97|1|1|6MZ|2030
6Q97|1|1|A|2031
6Q97|1|1|G|2032
6Q97|1|1|A|2033
6Q97|1|1|U|2034
6Q97|1|1|G|2035
6Q97|1|1|C|2036
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain R
- 50S ribosomal protein L21
- Chain b
- 50S ribosomal protein L32
Coloring options: