HL_6Q97_051

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGGACGCCAGUCUGC

Length

16 nucleotides

Bulged bases

6Q97|1|1|C|2146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|1|G|2138
6Q97|1|1|U|2139
6Q97|1|1|G|2140
6Q97|1|1|G|2141
6Q97|1|1|A|2142
6Q97|1|1|C|2143
6Q97|1|1|G|2144
6Q97|1|1|C|2145
6Q97|1|1|C|2146
6Q97|1|1|A|2147
6Q97|1|1|G|2148
6Q97|1|1|U|2149
6Q97|1|1|C|2150
6Q97|1|1|U|2151
6Q97|1|1|G|2152
6Q97|1|1|C|2153

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA