HL_6Q97_061

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAAGUAGG

Length

10 nucleotides

Bulged bases

6Q97|1|1|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q97_061 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3909

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6Q97|1|1|C|2527
6Q97|1|1|U|2528
6Q97|1|1|G|2529
6Q97|1|1|A|2530
6Q97|1|1|A|2531
6Q97|1|1|G|2532
6Q97|1|1|U|2533
6Q97|1|1|A|2534
6Q97|1|1|G|2535
6Q97|1|1|G|2536

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain f

50S ribosomal protein L36