HL_6Q97_066

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6Q97|1|1|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q97_066 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.2121

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6Q97|1|1|C|2745
6Q97|1|1|U|2746
6Q97|1|1|G|2747
6Q97|1|1|A|2748
6Q97|1|1|A|2749
6Q97|1|1|A|2750
6Q97|1|1|G|2751
6Q97|1|1|C|2752
6Q97|1|1|A|2753
6Q97|1|1|U|2754
6Q97|1|1|C|2755
6Q97|1|1|U|2756
6Q97|1|1|A|2757
6Q97|1|1|A|2758
6Q97|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain J

50S ribosomal protein L13

Chain f

50S ribosomal protein L36