HL_6Q97_082

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q97_082 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.257

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6Q97|1|2|G|521
6Q97|1|2|C|522
6Q97|1|2|A|523
6Q97|1|2|G|524
6Q97|1|2|C|525
6Q97|1|2|C|526
6Q97|1|2|7MG|527
6Q97|1|2|C|528

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

SsrA-binding protein

Chain q

30S ribosomal protein S12